Protein–RNA interactions for Protein: O15116

LSM1, U6 snRNA-associated Sm-like protein LSm1, humanhuman

Known RBP Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1O15116 RAB5CP1-201ENST00000395972 580 ntBASIC4.88□□□□□ -1.63
LSM1O15116 ZSCAN12P1-201ENST00000406489 419 ntBASIC4.88□□□□□ -1.63
LSM1O15116 AC093159.1-201ENST00000416845 424 ntTSL 3 BASIC4.88□□□□□ -1.63
LSM1O15116 CASP5-203ENST00000418434 1023 ntTSL 5 BASIC4.88□□□□□ -1.63
LSM1O15116 GAPDHP49-201ENST00000421421 961 ntBASIC4.88□□□□□ -1.63
LSM1O15116 AC012506.4-201ENST00000421563 541 ntTSL 4 BASIC4.88□□□□□ -1.63
LSM1O15116 AC016994.1-201ENST00000425419 552 ntTSL 4 BASIC4.88□□□□□ -1.63
LSM1O15116 MIR99AHG-205ENST00000435697 716 ntTSL 2 BASIC4.88□□□□□ -1.63
LSM1O15116 AC016395.1-201ENST00000444086 465 ntTSL 3 BASIC4.88□□□□□ -1.63
LSM1O15116 AP000302.1-201ENST00000450928 666 ntTSL 2 BASIC4.88□□□□□ -1.63
LSM1O15116 AC009365.2-201ENST00000453078 799 ntTSL 3 BASIC4.88□□□□□ -1.63
LSM1O15116 FGF7P3-201ENST00000454645 303 ntBASIC4.88□□□□□ -1.63
LSM1O15116 CLEC2A-202ENST00000455827 916 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
LSM1O15116 HSPE1P22-201ENST00000456856 327 ntBASIC4.88□□□□□ -1.63
LSM1O15116 AC007000.3-201ENST00000459742 617 ntTSL 3 BASIC4.88□□□□□ -1.63
LSM1O15116 RN7SL443P-201ENST00000464331 290 ntBASIC4.88□□□□□ -1.63
LSM1O15116 CREM-230ENST00000474931 626 ntTSL 2 BASIC4.88□□□□□ -1.63
LSM1O15116 NDUFB2-213ENST00000476470 482 ntTSL 5 BASIC4.88□□□□□ -1.63
LSM1O15116 AC080162.1-201ENST00000480764 491 ntTSL 3 BASIC4.88□□□□□ -1.63
LSM1O15116 AC016651.1-201ENST00000502680 822 ntTSL 3 BASIC4.88□□□□□ -1.63
LSM1O15116 AC073358.1-201ENST00000505671 684 ntBASIC4.88□□□□□ -1.63
LSM1O15116 ATXN3-215ENST00000532032 1191 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
LSM1O15116 ASB8-215ENST00000540782 659 ntTSL 3 BASIC4.88□□□□□ -1.63
LSM1O15116 PRR4-212ENST00000544994 326 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
LSM1O15116 AC087477.4-201ENST00000560586 542 ntTSL 4 BASIC4.88□□□□□ -1.63
LSM1O15116 ULK4P1-201ENST00000564495 875 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
LSM1O15116 ULK4P2-204ENST00000569682 798 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
LSM1O15116 AP005121.1-201ENST00000578243 469 ntTSL 3 BASIC4.88□□□□□ -1.63
LSM1O15116 AC022031.2-203ENST00000587346 565 ntTSL 4 BASIC4.88□□□□□ -1.63
LSM1O15116 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC4.88□□□□□ -1.63
LSM1O15116 RPL26P30-202ENST00000602923 645 ntBASIC4.88□□□□□ -1.63
LSM1O15116 TAS2R6P-201ENST00000605022 826 ntBASIC4.88□□□□□ -1.63
LSM1O15116 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC4.88□□□□□ -1.63
LSM1O15116 AC109309.2-201ENST00000612597 332 ntBASIC4.88□□□□□ -1.63
LSM1O15116 AC136428.4-201ENST00000634254 1155 ntBASIC4.88□□□□□ -1.63
LSM1O15116 ZNF273-204ENST00000476120 2000 ntAPPRIS P1 TSL 3 BASIC4.88□□□□□ -1.63
LSM1O15116 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
LSM1O15116 AP001267.1-201ENST00000531742 2074 ntTSL 2 BASIC4.88□□□□□ -1.63
LSM1O15116 MTND4P26-201ENST00000415971 1359 ntBASIC4.88□□□□□ -1.63
LSM1O15116 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC4.88□□□□□ -1.63
LSM1O15116 ZNF845-201ENST00000458035 4311 ntAPPRIS P1 TSL 4 BASIC4.88□□□□□ -1.63
LSM1O15116 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC4.88□□□□□ -1.63
LSM1O15116 FOXP2-204ENST00000390668 1472 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
LSM1O15116 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
LSM1O15116 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC4.87□□□□□ -1.63
LSM1O15116 AL161911.1-202ENST00000464488 1534 ntAPPRIS P1 TSL 5 BASIC4.87□□□□□ -1.63
LSM1O15116 CEP290-202ENST00000397838 2421 ntTSL 5 BASIC4.87□□□□□ -1.63
LSM1O15116 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC4.87□□□□□ -1.63
LSM1O15116 PGM3-211ENST00000512866 2013 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
LSM1O15116 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
LSM1O15116 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC4.87□□□□□ -1.63
LSM1O15116 MRRF-207ENST00000373729 870 ntTSL 3 BASIC4.87□□□□□ -1.63
LSM1O15116 MIR708-201ENST00000390708 88 ntBASIC4.87□□□□□ -1.63
LSM1O15116 HMGB3P7-201ENST00000400214 611 ntBASIC4.87□□□□□ -1.63
LSM1O15116 RPL5P19-201ENST00000404228 893 ntBASIC4.87□□□□□ -1.63
LSM1O15116 RAB9AP4-201ENST00000415230 609 ntBASIC4.87□□□□□ -1.63
LSM1O15116 RPL36AP10-201ENST00000421785 322 ntBASIC4.87□□□□□ -1.63
LSM1O15116 AL031428.1-201ENST00000427154 666 ntTSL 2 BASIC4.87□□□□□ -1.63
LSM1O15116 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC4.87□□□□□ -1.63
LSM1O15116 BX323845.1-201ENST00000432417 179 ntBASIC4.87□□□□□ -1.63
LSM1O15116 AL121957.1-202ENST00000437040 329 ntTSL 3 BASIC4.87□□□□□ -1.63
LSM1O15116 AL050338.1-201ENST00000445585 786 ntTSL 3 BASIC4.87□□□□□ -1.63
LSM1O15116 AL160408.1-203ENST00000453568 631 ntTSL 5 BASIC4.87□□□□□ -1.63
LSM1O15116 AC007386.1-201ENST00000455212 582 ntBASIC4.87□□□□□ -1.63
LSM1O15116 AC005674.1-201ENST00000503493 459 ntTSL 3 BASIC4.87□□□□□ -1.63
LSM1O15116 ZCCHC10-203ENST00000504170 325 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
LSM1O15116 LINC01365-202ENST00000512219 637 ntTSL 5 BASIC4.87□□□□□ -1.63
LSM1O15116 MTATP6P1-201ENST00000514057 681 ntBASIC4.87□□□□□ -1.63
LSM1O15116 AC026719.2-201ENST00000515656 295 ntTSL 3 BASIC4.87□□□□□ -1.63
LSM1O15116 MTCYBP19-201ENST00000517463 1124 ntBASIC4.87□□□□□ -1.63
LSM1O15116 AC068672.3-201ENST00000524017 824 ntTSL 3 BASIC4.87□□□□□ -1.63
LSM1O15116 AC079089.1-204ENST00000530194 572 ntTSL 2 BASIC4.87□□□□□ -1.63
LSM1O15116 LINC01243-201ENST00000562065 721 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
LSM1O15116 AC090844.2-201ENST00000578802 436 ntTSL 4 BASIC4.87□□□□□ -1.63
LSM1O15116 AC022098.3-201ENST00000590715 315 ntTSL 3 BASIC4.87□□□□□ -1.63
LSM1O15116 AC007390.2-201ENST00000606229 3803 ntBASIC4.87□□□□□ -1.63
LSM1O15116 AC097376.2-202ENST00000608345 433 ntTSL 3 BASIC4.87□□□□□ -1.63
LSM1O15116 AC093495.1-217ENST00000627385 428 ntTSL 5 BASIC4.87□□□□□ -1.63
LSM1O15116 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
LSM1O15116 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC4.87□□□□□ -1.63
LSM1O15116 ALB-219ENST00000621085 1418 ntTSL 5 BASIC4.87□□□□□ -1.63
LSM1O15116 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
LSM1O15116 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC4.87□□□□□ -1.63
LSM1O15116 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
LSM1O15116 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC4.86□□□□□ -1.63
LSM1O15116 CDC16-202ENST00000252458 1991 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
LSM1O15116 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
LSM1O15116 CLPS-201ENST00000259938 526 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
LSM1O15116 BCL2A1-201ENST00000267953 1033 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
LSM1O15116 RNA5SP28-201ENST00000363841 119 ntBASIC4.86□□□□□ -1.63
LSM1O15116 AC019155.1-201ENST00000382242 574 ntBASIC4.86□□□□□ -1.63
LSM1O15116 MIR600-201ENST00000385007 98 ntBASIC4.86□□□□□ -1.63
LSM1O15116 CAPSL-201ENST00000397366 969 ntAPPRIS P1 TSL 3 BASIC4.86□□□□□ -1.63
LSM1O15116 MIR1282-201ENST00000408865 101 ntBASIC4.86□□□□□ -1.63
LSM1O15116 RNA5SP178-201ENST00000410380 128 ntBASIC4.86□□□□□ -1.63
LSM1O15116 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC4.86□□□□□ -1.63
LSM1O15116 AL590609.2-201ENST00000421430 368 ntBASIC4.86□□□□□ -1.63
LSM1O15116 AC108075.1-201ENST00000424692 529 ntBASIC4.86□□□□□ -1.63
LSM1O15116 LINC01400-201ENST00000426358 947 ntTSL 3 BASIC4.86□□□□□ -1.63
LSM1O15116 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 98.7 ms