Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 OR51B3P-201ENST00000412287 913 ntBASIC6.41□□□□□ -1.38
HOXC9P31274 DEFB122-201ENST00000433453 499 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
HOXC9P31274 RPS17P8-201ENST00000434525 335 ntBASIC6.41□□□□□ -1.38
HOXC9P31274 AC097523.2-201ENST00000435551 652 ntBASIC6.41□□□□□ -1.38
HOXC9P31274 AC000111.1-201ENST00000441019 221 ntTSL 3 BASIC6.41□□□□□ -1.38
HOXC9P31274 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC6.41□□□□□ -1.38
HOXC9P31274 OR52E3P-201ENST00000452083 936 ntBASIC6.41□□□□□ -1.38
HOXC9P31274 AL356309.2-201ENST00000454034 719 ntTSL 5 BASIC6.41□□□□□ -1.38
HOXC9P31274 BMPR1B-204ENST00000502683 567 ntTSL 4 BASIC6.41□□□□□ -1.38
HOXC9P31274 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC6.41□□□□□ -1.38
HOXC9P31274 SNORA48.9-201ENST00000516419 162 ntBASIC6.41□□□□□ -1.38
HOXC9P31274 AC068831.4-201ENST00000556118 109 ntBASIC6.41□□□□□ -1.38
HOXC9P31274 AC040958.1-201ENST00000561102 201 ntBASIC6.41□□□□□ -1.38
HOXC9P31274 AL352984.2-202ENST00000613699 155 ntBASIC6.41□□□□□ -1.38
HOXC9P31274 AL591926.2-202ENST00000615199 719 ntTSL 5 BASIC6.41□□□□□ -1.38
HOXC9P31274 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
HOXC9P31274 MAPK10-263ENST00000641052 4307 ntBASIC6.41□□□□□ -1.38
HOXC9P31274 AC233968.1-201ENST00000611212 1300 ntBASIC6.41□□□□□ -1.38
HOXC9P31274 ELAVL2-202ENST00000380110 3691 ntTSL 5 BASIC6.41□□□□□ -1.38
HOXC9P31274 AC018557.1-201ENST00000569274 1790 ntTSL 5 BASIC6.41□□□□□ -1.38
HOXC9P31274 WEE2-201ENST00000397541 3061 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
HOXC9P31274 G3BP1-202ENST00000394123 10240 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
HOXC9P31274 AC004817.4-201ENST00000602396 3625 ntBASIC6.4□□□□□ -1.38
HOXC9P31274 SLC4A10-204ENST00000421911 3398 ntTSL 5 BASIC6.4□□□□□ -1.38
HOXC9P31274 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC6.4□□□□□ -1.38
HOXC9P31274 ETV1-208ENST00000420159 6231 ntTSL 2 BASIC6.4□□□□□ -1.38
HOXC9P31274 ASXL2-203ENST00000435504 12878 ntAPPRIS P5 TSL 5 BASIC6.4□□□□□ -1.38
HOXC9P31274 API5-210ENST00000534600 1760 ntTSL 5 BASIC6.4□□□□□ -1.38
HOXC9P31274 AL592293.2-201ENST00000422292 996 ntBASIC6.4□□□□□ -1.38
HOXC9P31274 AL139327.2-202ENST00000437057 400 ntTSL 3 BASIC6.4□□□□□ -1.38
HOXC9P31274 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC6.4□□□□□ -1.38
HOXC9P31274 OR7L1P-201ENST00000456181 380 ntBASIC6.4□□□□□ -1.38
HOXC9P31274 RN7SL517P-201ENST00000462240 305 ntBASIC6.4□□□□□ -1.38
HOXC9P31274 AC103987.1-201ENST00000473394 348 ntBASIC6.4□□□□□ -1.38
HOXC9P31274 MGAT4D-203ENST00000511113 1125 ntAPPRIS P2 TSL 5 BASIC6.4□□□□□ -1.38
HOXC9P31274 AP002981.1-201ENST00000517692 975 ntBASIC6.4□□□□□ -1.38
HOXC9P31274 LINC02307-201ENST00000553827 257 ntTSL 3 BASIC6.4□□□□□ -1.38
HOXC9P31274 AL110505.1-201ENST00000557062 522 ntTSL 3 BASIC6.4□□□□□ -1.38
HOXC9P31274 ATP5J2P6-201ENST00000565203 266 ntBASIC6.4□□□□□ -1.38
HOXC9P31274 ALOX12P2-208ENST00000574183 519 ntTSL 3 BASIC6.4□□□□□ -1.38
HOXC9P31274 AL157938.2-209ENST00000589128 792 ntTSL 2 BASIC6.4□□□□□ -1.38
HOXC9P31274 AC010615.3-201ENST00000597319 394 ntBASIC6.4□□□□□ -1.38
HOXC9P31274 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
HOXC9P31274 AC016717.3-201ENST00000624730 554 ntBASIC6.4□□□□□ -1.38
HOXC9P31274 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC6.4□□□□□ -1.39
HOXC9P31274 DICER1-212ENST00000541352 5621 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
HOXC9P31274 BLZF1-203ENST00000367808 2749 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
HOXC9P31274 STAP1-201ENST00000265404 1511 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
HOXC9P31274 PIGK-202ENST00000370812 4596 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
HOXC9P31274 STXBP4-202ENST00000398391 2160 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
HOXC9P31274 AL138820.1-201ENST00000617901 5305 ntBASIC6.4□□□□□ -1.39
HOXC9P31274 LRRC49-204ENST00000544974 6605 ntTSL 2 BASIC6.4□□□□□ -1.39
HOXC9P31274 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
HOXC9P31274 INHBA-AS1-203ENST00000422822 2312 ntTSL 2 BASIC6.39□□□□□ -1.39
HOXC9P31274 ZNF260-204ENST00000592282 5055 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
HOXC9P31274 CDON-206ENST00000531738 5803 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
HOXC9P31274 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC6.39□□□□□ -1.39
HOXC9P31274 LTA4H-202ENST00000413268 1908 ntTSL 2 BASIC6.39□□□□□ -1.39
HOXC9P31274 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC6.39□□□□□ -1.39
HOXC9P31274 PYHIN1-203ENST00000368140 2083 ntAPPRIS P4 TSL 1 (best) BASIC6.39□□□□□ -1.39
HOXC9P31274 RNU1-82P-201ENST00000390851 165 ntBASIC6.39□□□□□ -1.39
HOXC9P31274 SNORA11-201ENST00000408789 128 ntBASIC6.39□□□□□ -1.39
HOXC9P31274 CASKP1-201ENST00000412870 582 ntBASIC6.39□□□□□ -1.39
HOXC9P31274 AC117434.1-201ENST00000419971 836 ntBASIC6.39□□□□□ -1.39
HOXC9P31274 RSL24D1P6-201ENST00000426934 401 ntBASIC6.39□□□□□ -1.39
HOXC9P31274 RPS27AP6-201ENST00000427962 448 ntBASIC6.39□□□□□ -1.39
HOXC9P31274 UBE2V2P1-201ENST00000434717 398 ntBASIC6.39□□□□□ -1.39
HOXC9P31274 TXNP2-201ENST00000443918 295 ntBASIC6.39□□□□□ -1.39
HOXC9P31274 AP001596.1-202ENST00000452460 644 ntTSL 3 BASIC6.39□□□□□ -1.39
HOXC9P31274 IGBP1P5-201ENST00000507524 1000 ntBASIC6.39□□□□□ -1.39
HOXC9P31274 RNU1-6P-201ENST00000516290 144 ntBASIC6.39□□□□□ -1.39
HOXC9P31274 TBCA-207ENST00000520039 157 ntTSL 3 BASIC6.39□□□□□ -1.39
HOXC9P31274 AC100784.1-201ENST00000522790 310 ntBASIC6.39□□□□□ -1.39
HOXC9P31274 AC026616.1-201ENST00000523157 525 ntBASIC6.39□□□□□ -1.39
HOXC9P31274 AC012409.1-202ENST00000558449 639 ntTSL 2 BASIC6.39□□□□□ -1.39
HOXC9P31274 AC093249.4-201ENST00000564755 259 ntBASIC6.39□□□□□ -1.39
HOXC9P31274 AC099518.4-204ENST00000567047 380 ntTSL 2 BASIC6.39□□□□□ -1.39
HOXC9P31274 AL590392.1-201ENST00000604960 446 ntBASIC6.39□□□□□ -1.39
HOXC9P31274 AL356218.2-201ENST00000605264 187 ntBASIC6.39□□□□□ -1.39
HOXC9P31274 SLC35A1-205ENST00000622775 1206 ntTSL 5 BASIC6.39□□□□□ -1.39
HOXC9P31274 PDE4B-201ENST00000329654 3998 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
HOXC9P31274 PKIB-211ENST00000615438 1936 ntTSL 5 BASIC6.38□□□□□ -1.39
HOXC9P31274 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
HOXC9P31274 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC6.38□□□□□ -1.39
HOXC9P31274 IGKV7-3-201ENST00000357453 298 ntBASIC6.38□□□□□ -1.39
HOXC9P31274 RNA5SP447-201ENST00000363749 119 ntBASIC6.38□□□□□ -1.39
HOXC9P31274 SIRPD-201ENST00000381621 823 ntAPPRIS ALT2 TSL 3 BASIC6.38□□□□□ -1.39
HOXC9P31274 COX5BP7-201ENST00000414780 274 ntBASIC6.38□□□□□ -1.39
HOXC9P31274 GLUD1P9-201ENST00000420997 1173 ntBASIC6.38□□□□□ -1.39
HOXC9P31274 RC3H1-IT1-201ENST00000421851 448 ntTSL 5 BASIC6.38□□□□□ -1.39
HOXC9P31274 GNGT1-204ENST00000430875 628 ntTSL 2 BASIC6.38□□□□□ -1.39
HOXC9P31274 AC073143.1-201ENST00000436316 395 ntBASIC6.38□□□□□ -1.39
HOXC9P31274 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC6.38□□□□□ -1.39
HOXC9P31274 AL161722.1-201ENST00000446972 1032 ntBASIC6.38□□□□□ -1.39
HOXC9P31274 FCF1P7-201ENST00000451185 558 ntBASIC6.38□□□□□ -1.39
HOXC9P31274 AC010149.1-201ENST00000455357 571 ntTSL 4 BASIC6.38□□□□□ -1.39
HOXC9P31274 AL133372.1-201ENST00000493565 745 ntBASIC6.38□□□□□ -1.39
HOXC9P31274 CDV3-208ENST00000511392 554 ntTSL 5 BASIC6.38□□□□□ -1.39
HOXC9P31274 RN7SKP122-201ENST00000515923 296 ntBASIC6.38□□□□□ -1.39
HOXC9P31274 SNORA74C-1-201ENST00000580726 201 ntBASIC6.38□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 95.1 ms