Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC6.49□□□□□ -1.37
COL6A1P12109 AC073850.1-201ENST00000449243 255 ntBASIC6.49□□□□□ -1.37
COL6A1P12109 MTND1P27-201ENST00000451117 902 ntBASIC6.49□□□□□ -1.37
COL6A1P12109 MID1-209ENST00000453318 6393 ntAPPRIS P1 TSL 5 BASIC6.49□□□□□ -1.37
COL6A1P12109 CREM-220ENST00000463314 964 ntTSL 2 BASIC6.49□□□□□ -1.37
COL6A1P12109 RPL21P47-201ENST00000483696 477 ntBASIC6.49□□□□□ -1.37
COL6A1P12109 LINC02006-201ENST00000488210 524 ntTSL 4 BASIC6.49□□□□□ -1.37
COL6A1P12109 AC004889.1-208ENST00000489077 423 ntTSL 3 BASIC6.49□□□□□ -1.37
COL6A1P12109 AC018816.1-205ENST00000489771 509 ntTSL 2 BASIC6.49□□□□□ -1.37
COL6A1P12109 AC092916.1-201ENST00000497896 411 ntTSL 3 BASIC6.49□□□□□ -1.37
COL6A1P12109 AC024132.2-201ENST00000506878 482 ntTSL 3 BASIC6.49□□□□□ -1.37
COL6A1P12109 RPL37-204ENST00000508493 553 ntAPPRIS ALT1 TSL 1 (best) BASIC6.49□□□□□ -1.37
COL6A1P12109 RN7SKP66-201ENST00000516681 231 ntBASIC6.49□□□□□ -1.37
COL6A1P12109 IGHVIII-47-1-201ENST00000518187 331 ntBASIC6.49□□□□□ -1.37
COL6A1P12109 AC111149.1-201ENST00000522560 343 ntTSL 3 BASIC6.49□□□□□ -1.37
COL6A1P12109 OR9A4-201ENST00000548136 1093 ntAPPRIS P1 BASIC6.49□□□□□ -1.37
COL6A1P12109 LYZ-203ENST00000549690 669 ntTSL 2 BASIC6.49□□□□□ -1.37
COL6A1P12109 PPFIA2-219ENST00000550359 3808 ntTSL 2 BASIC6.49□□□□□ -1.37
COL6A1P12109 AL049779.2-201ENST00000553847 315 ntBASIC6.49□□□□□ -1.37
COL6A1P12109 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC6.49□□□□□ -1.37
COL6A1P12109 LINC02345-201ENST00000557883 766 ntTSL 3 BASIC6.49□□□□□ -1.37
COL6A1P12109 AC090607.1-201ENST00000560057 449 ntTSL 3 BASIC6.49□□□□□ -1.37
COL6A1P12109 AC087463.4-202ENST00000566676 579 ntTSL 3 BASIC6.49□□□□□ -1.37
COL6A1P12109 ARL2BPP3-202ENST00000580773 420 ntTSL 5 BASIC6.49□□□□□ -1.37
COL6A1P12109 MIR4260-201ENST00000583107 67 ntBASIC6.49□□□□□ -1.37
COL6A1P12109 TTN-AS1-222ENST00000587576 399 ntTSL 3 BASIC6.49□□□□□ -1.37
COL6A1P12109 AC015802.3-201ENST00000590241 570 ntTSL 4 BASIC6.49□□□□□ -1.37
COL6A1P12109 HIRAP1-201ENST00000605318 787 ntBASIC6.49□□□□□ -1.37
COL6A1P12109 LINC02183-201ENST00000637822 1732 ntTSL 5 BASIC6.49□□□□□ -1.37
COL6A1P12109 UGT2B26P-201ENST00000508672 1613 ntBASIC6.49□□□□□ -1.37
COL6A1P12109 SPRY3-201ENST00000302805 9019 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
COL6A1P12109 FANCD2-205ENST00000431693 2450 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
COL6A1P12109 AC007114.2-201ENST00000576014 4281 ntBASIC6.48□□□□□ -1.37
COL6A1P12109 CAPN6-201ENST00000324068 3568 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
COL6A1P12109 RBMS3-202ENST00000383766 2757 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
COL6A1P12109 PCLO-203ENST00000423517 17147 ntTSL 5 BASIC6.48□□□□□ -1.37
COL6A1P12109 CYLD-203ENST00000427738 8503 ntTSL 5 BASIC6.48□□□□□ -1.37
COL6A1P12109 PDE4D-202ENST00000317118 2599 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
COL6A1P12109 LINC02401-201ENST00000550185 3059 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
COL6A1P12109 AL645733.1-201ENST00000402250 217 ntBASIC6.48□□□□□ -1.37
COL6A1P12109 HNMT-204ENST00000410115 1150 ntAPPRIS P1 TSL 5 BASIC6.48□□□□□ -1.37
COL6A1P12109 AL449283.1-202ENST00000418249 604 ntBASIC6.48□□□□□ -1.37
COL6A1P12109 NENFP1-201ENST00000419476 466 ntBASIC6.48□□□□□ -1.37
COL6A1P12109 OR5M12P-201ENST00000423388 929 ntBASIC6.48□□□□□ -1.37
COL6A1P12109 MIR646HG-202ENST00000426753 651 ntTSL 2 BASIC6.48□□□□□ -1.37
COL6A1P12109 AC099677.3-201ENST00000427081 395 ntBASIC6.48□□□□□ -1.37
COL6A1P12109 AL390023.1-201ENST00000428836 262 ntBASIC6.48□□□□□ -1.37
COL6A1P12109 OR52B5P-201ENST00000435337 951 ntBASIC6.48□□□□□ -1.37
COL6A1P12109 AL451136.1-201ENST00000435399 325 ntBASIC6.48□□□□□ -1.37
COL6A1P12109 CLEC5A-202ENST00000438351 743 ntTSL 3 BASIC6.48□□□□□ -1.37
COL6A1P12109 AL772161.1-201ENST00000439130 476 ntBASIC6.48□□□□□ -1.37
COL6A1P12109 RPL21P133-201ENST00000443666 476 ntBASIC6.48□□□□□ -1.37
COL6A1P12109 AF015262.1-201ENST00000455028 698 ntTSL 3 BASIC6.48□□□□□ -1.37
COL6A1P12109 ASH1L-IT1-201ENST00000458371 448 ntTSL 5 BASIC6.48□□□□□ -1.37
COL6A1P12109 RN7SL352P-201ENST00000466002 277 ntBASIC6.48□□□□□ -1.37
COL6A1P12109 AC091212.1-201ENST00000474798 395 ntTSL 5 BASIC6.48□□□□□ -1.37
COL6A1P12109 RPL23AP40-201ENST00000487630 390 ntBASIC6.48□□□□□ -1.37
COL6A1P12109 HMGB1P3-201ENST00000502802 616 ntBASIC6.48□□□□□ -1.37
COL6A1P12109 LAMTOR3P2-201ENST00000504479 232 ntBASIC6.48□□□□□ -1.37
COL6A1P12109 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC6.48□□□□□ -1.37
COL6A1P12109 AL049544.1-201ENST00000511849 673 ntTSL 3 BASIC6.48□□□□□ -1.37
COL6A1P12109 AC011352.1-201ENST00000512300 793 ntBASIC6.48□□□□□ -1.37
COL6A1P12109 LINC02353-201ENST00000515181 849 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
COL6A1P12109 AP003354.2-201ENST00000517983 563 ntTSL 4 BASIC6.48□□□□□ -1.37
COL6A1P12109 AF117829.1-208ENST00000521996 915 ntTSL 3 BASIC6.48□□□□□ -1.37
COL6A1P12109 RRAS2-205ENST00000529237 1278 ntTSL 2 BASIC6.48□□□□□ -1.37
COL6A1P12109 AL133330.2-201ENST00000532760 776 ntTSL 2 BASIC6.48□□□□□ -1.37
COL6A1P12109 OR8G3P-201ENST00000533406 921 ntBASIC6.48□□□□□ -1.37
COL6A1P12109 AC108721.1-201ENST00000547088 348 ntTSL 3 BASIC6.48□□□□□ -1.37
COL6A1P12109 AC084824.1-201ENST00000550917 1005 ntBASIC6.48□□□□□ -1.37
COL6A1P12109 AC007346.2-201ENST00000564816 892 ntBASIC6.48□□□□□ -1.37
COL6A1P12109 RBM22P12-201ENST00000567098 1255 ntBASIC6.48□□□□□ -1.37
COL6A1P12109 AP005136.1-201ENST00000579765 429 ntBASIC6.48□□□□□ -1.37
COL6A1P12109 ELOCP28-201ENST00000590044 317 ntBASIC6.48□□□□□ -1.37
COL6A1P12109 AC091193.1-201ENST00000604640 448 ntBASIC6.48□□□□□ -1.37
COL6A1P12109 VIS1.1-201ENST00000610517 203 ntBASIC6.48□□□□□ -1.37
COL6A1P12109 AC087633.2-201ENST00000618611 725 ntTSL 3 BASIC6.48□□□□□ -1.37
COL6A1P12109 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC6.48□□□□□ -1.37
COL6A1P12109 AC104985.3-201ENST00000623479 597 ntBASIC6.48□□□□□ -1.37
COL6A1P12109 LAMTOR5-AS1-233ENST00000625451 470 ntTSL 5 BASIC6.48□□□□□ -1.37
COL6A1P12109 TTN-AS1-267ENST00000628826 662 ntTSL 5 BASIC6.48□□□□□ -1.37
COL6A1P12109 OR52B5P-202ENST00000641118 1110 ntBASIC6.48□□□□□ -1.37
COL6A1P12109 AL662795.2-201ENST00000624252 3706 ntBASIC6.48□□□□□ -1.37
COL6A1P12109 SMC1A-202ENST00000375340 9930 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
COL6A1P12109 AC087516.2-201ENST00000558963 3042 ntTSL 3 BASIC6.48□□□□□ -1.37
COL6A1P12109 KCNJ15-201ENST00000328656 8399 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
COL6A1P12109 CNTN5-204ENST00000524871 6258 ntAPPRIS P4 TSL 1 (best) BASIC6.48□□□□□ -1.37
COL6A1P12109 EXD1-202ENST00000458580 2177 ntAPPRIS ALT2 TSL 2 BASIC6.48□□□□□ -1.37
COL6A1P12109 CSDE1-203ENST00000358528 4076 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
COL6A1P12109 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
COL6A1P12109 RAD51B-210ENST00000487270 2596 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
COL6A1P12109 AC008432.1-201ENST00000615912 1320 ntBASIC6.48□□□□□ -1.37
COL6A1P12109 OR7C1-204ENST00000642000 11290 ntAPPRIS P1 BASIC6.48□□□□□ -1.37
COL6A1P12109 BDNF-211ENST00000439476 4532 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
COL6A1P12109 TRPM7-201ENST00000313478 10400 ntAPPRIS P3 TSL 1 (best) BASIC6.47□□□□□ -1.37
COL6A1P12109 RGS6-204ENST00000404301 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC6.47□□□□□ -1.37
COL6A1P12109 RGS6-206ENST00000407322 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC6.47□□□□□ -1.37
COL6A1P12109 POLK-204ENST00000504026 1484 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
COL6A1P12109 ZNF343-207ENST00000612935 3675 ntAPPRIS ALT2 TSL 5 BASIC6.47□□□□□ -1.37
COL6A1P12109 BICRAL-202ENST00000394168 6515 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 84.1 ms