Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 AC118470.1-201ENST00000419891 453 ntAPPRIS P1 TSL 3 BASIC8.03□□□□□ -1.12
RNF40O75150 RPL34P3-201ENST00000421454 338 ntBASIC8.03□□□□□ -1.12
RNF40O75150 AL158073.1-201ENST00000426848 1104 ntBASIC8.03□□□□□ -1.12
RNF40O75150 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC8.03□□□□□ -1.12
RNF40O75150 AL137792.2-201ENST00000443484 235 ntBASIC8.03□□□□□ -1.12
RNF40O75150 AC009950.1-206ENST00000445199 517 ntTSL 3 BASIC8.03□□□□□ -1.12
RNF40O75150 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC8.03□□□□□ -1.12
RNF40O75150 AC020719.1-201ENST00000448977 518 ntTSL 3 BASIC8.03□□□□□ -1.12
RNF40O75150 MTCO3P10-201ENST00000455912 772 ntBASIC8.03□□□□□ -1.12
RNF40O75150 LINC00881-201ENST00000467995 589 ntTSL 4 BASIC8.03□□□□□ -1.12
RNF40O75150 AC110772.1-201ENST00000503037 474 ntTSL 3 BASIC8.03□□□□□ -1.12
RNF40O75150 AC010409.2-201ENST00000505780 478 ntBASIC8.03□□□□□ -1.12
RNF40O75150 AC098487.1-203ENST00000512915 546 ntTSL 5 BASIC8.03□□□□□ -1.12
RNF40O75150 RN7SKP242-201ENST00000515967 289 ntBASIC8.03□□□□□ -1.12
RNF40O75150 SNORD60.2-201ENST00000516883 86 ntBASIC8.03□□□□□ -1.12
RNF40O75150 LINC00861-202ENST00000517869 606 ntTSL 5 BASIC8.03□□□□□ -1.12
RNF40O75150 TPM3P3-201ENST00000521343 354 ntBASIC8.03□□□□□ -1.12
RNF40O75150 PSMA2P1-201ENST00000526365 646 ntBASIC8.03□□□□□ -1.12
RNF40O75150 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC8.03□□□□□ -1.12
RNF40O75150 AP004607.5-201ENST00000532034 217 ntBASIC8.03□□□□□ -1.12
RNF40O75150 AP000889.2-201ENST00000532684 490 ntBASIC8.03□□□□□ -1.12
RNF40O75150 AL161670.1-201ENST00000554348 137 ntBASIC8.03□□□□□ -1.12
RNF40O75150 AL355102.1-201ENST00000555383 460 ntTSL 5 BASIC8.03□□□□□ -1.12
RNF40O75150 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC8.03□□□□□ -1.12
RNF40O75150 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC8.03□□□□□ -1.12
RNF40O75150 OR1N1-202ENST00000619659 939 ntBASIC8.03□□□□□ -1.12
RNF40O75150 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC8.03□□□□□ -1.12
RNF40O75150 NAALAD2-201ENST00000321955 3035 ntTSL 2 BASIC8.03□□□□□ -1.12
RNF40O75150 ERV3-1-201ENST00000394323 2719 ntAPPRIS P1 TSL 2 BASIC8.03□□□□□ -1.12
RNF40O75150 AC092807.3-203ENST00000467530 2745 ntTSL 2 BASIC8.03□□□□□ -1.12
RNF40O75150 PIGN-225ENST00000638435 4382 ntTSL 5 BASIC8.03□□□□□ -1.12
RNF40O75150 C15orf41-202ENST00000437989 2240 ntAPPRIS P3 TSL 1 (best) BASIC8.03□□□□□ -1.12
RNF40O75150 TRRAP-201ENST00000355540 12590 ntAPPRIS P3 TSL 1 (best) BASIC8.03□□□□□ -1.12
RNF40O75150 GABRA6-201ENST00000274545 2128 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
RNF40O75150 REST-201ENST00000309042 7300 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
RNF40O75150 OR2H2-202ENST00000641840 3061 ntAPPRIS P1 BASIC8.03□□□□□ -1.12
RNF40O75150 MID1-202ENST00000380779 6044 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
RNF40O75150 NBPF14-209ENST00000620240 2656 ntTSL 5 BASIC8.03□□□□□ -1.12
RNF40O75150 CHURC1-208ENST00000607599 3615 ntTSL 2 BASIC8.03□□□□□ -1.12
RNF40O75150 PRLR-213ENST00000514088 1440 ntTSL 5 BASIC8.03□□□□□ -1.12
RNF40O75150 PHTF2-207ENST00000424760 1977 ntTSL 2 BASIC8.02□□□□□ -1.12
RNF40O75150 COLCA1-205ENST00000620864 8098 ntTSL 1 (best) BASIC8.02□□□□□ -1.12
RNF40O75150 TMEM269-204ENST00000637012 3354 ntAPPRIS ALT2 TSL 5 BASIC8.02□□□□□ -1.12
RNF40O75150 AC135178.2-201ENST00000582471 3087 ntAPPRIS P1 TSL 5 BASIC8.02□□□□□ -1.13
RNF40O75150 ZNF426-201ENST00000253115 7085 ntAPPRIS P3 TSL 1 (best) BASIC8.02□□□□□ -1.13
RNF40O75150 MEPE-204ENST00000497649 2226 ntAPPRIS ALT2 TSL 5 BASIC8.02□□□□□ -1.13
RNF40O75150 PDGFRA-206ENST00000508170 2202 ntTSL 1 (best) BASIC8.02□□□□□ -1.13
RNF40O75150 LINC01559-201ENST00000318426 2750 ntTSL 2 BASIC8.02□□□□□ -1.13
RNF40O75150 DNAH10-210ENST00000638045 13678 ntAPPRIS P2 TSL 5 BASIC8.02□□□□□ -1.13
RNF40O75150 GSDMB-202ENST00000360317 1468 ntAPPRIS ALT2 TSL 1 (best) BASIC8.02□□□□□ -1.13
RNF40O75150 ZNF3-203ENST00000303915 3473 ntAPPRIS P1 TSL 5 BASIC8.02□□□□□ -1.13
RNF40O75150 TRIM6-TRIM34-201ENST00000354852 3391 ntAPPRIS P1 TSL 2 BASIC8.02□□□□□ -1.13
RNF40O75150 AL078621.1-201ENST00000272567 768 ntBASIC8.02□□□□□ -1.13
RNF40O75150 RIT2-201ENST00000326695 1092 ntAPPRIS P1 TSL 1 (best) BASIC8.02□□□□□ -1.13
RNF40O75150 KIF16B-202ENST00000355755 606 ntTSL 1 (best) BASIC8.02□□□□□ -1.13
RNF40O75150 Y_RNA.149-201ENST00000363558 117 ntBASIC8.02□□□□□ -1.13
RNF40O75150 NCR2-201ENST00000373083 1154 ntAPPRIS ALT2 TSL 1 (best) BASIC8.02□□□□□ -1.13
RNF40O75150 RNU6-1158P-201ENST00000391167 107 ntBASIC8.02□□□□□ -1.13
RNF40O75150 IYD-205ENST00000392256 882 ntTSL 1 (best) BASIC8.02□□□□□ -1.13
RNF40O75150 ATXN10-203ENST00000402380 564 ntTSL 4 BASIC8.02□□□□□ -1.13
RNF40O75150 SNORA11C-201ENST00000408532 129 ntBASIC8.02□□□□□ -1.13
RNF40O75150 TTTY12-201ENST00000413466 979 ntTSL 1 (best) BASIC8.02□□□□□ -1.13
RNF40O75150 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC8.02□□□□□ -1.13
RNF40O75150 AP001043.1-203ENST00000415824 407 ntTSL 5 BASIC8.02□□□□□ -1.13
RNF40O75150 AL390195.1-202ENST00000416099 723 ntTSL 2 BASIC8.02□□□□□ -1.13
RNF40O75150 HMGA1P4-201ENST00000428643 334 ntTSL 2 BASIC8.02□□□□□ -1.13
RNF40O75150 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC8.02□□□□□ -1.13
RNF40O75150 GAPDHP32-201ENST00000433816 998 ntBASIC8.02□□□□□ -1.13
RNF40O75150 RPL32P28-201ENST00000443577 397 ntBASIC8.02□□□□□ -1.13
RNF40O75150 PARD3-AS1-201ENST00000446211 302 ntTSL 2 BASIC8.02□□□□□ -1.13
RNF40O75150 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC8.02□□□□□ -1.13
RNF40O75150 AC091685.2-201ENST00000454924 864 ntBASIC8.02□□□□□ -1.13
RNF40O75150 AL590490.1-201ENST00000455599 316 ntTSL 5 BASIC8.02□□□□□ -1.13
RNF40O75150 AC099563.1-201ENST00000456086 418 ntBASIC8.02□□□□□ -1.13
RNF40O75150 RPSAP48-201ENST00000466509 889 ntBASIC8.02□□□□□ -1.13
RNF40O75150 RN7SL58P-201ENST00000473445 294 ntBASIC8.02□□□□□ -1.13
RNF40O75150 MRPL49P1-201ENST00000505951 535 ntBASIC8.02□□□□□ -1.13
RNF40O75150 AC107222.1-201ENST00000510899 637 ntBASIC8.02□□□□□ -1.13
RNF40O75150 LINC01262-201ENST00000513681 879 ntTSL 1 (best) BASIC8.02□□□□□ -1.13
RNF40O75150 LINC00535-202ENST00000517785 264 ntTSL 3 BASIC8.02□□□□□ -1.13
RNF40O75150 OR4N1P-201ENST00000554847 949 ntBASIC8.02□□□□□ -1.13
RNF40O75150 AC079075.1-201ENST00000559543 878 ntBASIC8.02□□□□□ -1.13
RNF40O75150 AC103876.1-202ENST00000561498 369 ntTSL 3 BASIC8.02□□□□□ -1.13
RNF40O75150 AC105411.1-203ENST00000568819 601 ntTSL 5 BASIC8.02□□□□□ -1.13
RNF40O75150 MIR544B-201ENST00000582372 78 ntBASIC8.02□□□□□ -1.13
RNF40O75150 AC090241.1-201ENST00000587732 621 ntBASIC8.02□□□□□ -1.13
RNF40O75150 AC005884.2-201ENST00000593107 247 ntTSL 5 BASIC8.02□□□□□ -1.13
RNF40O75150 LINC00347-205ENST00000597518 868 ntTSL 5 BASIC8.02□□□□□ -1.13
RNF40O75150 BCRP9-201ENST00000605312 388 ntBASIC8.02□□□□□ -1.13
RNF40O75150 MIR98-201ENST00000606724 119 ntBASIC8.02□□□□□ -1.13
RNF40O75150 AC097468.3-201ENST00000607956 456 ntBASIC8.02□□□□□ -1.13
RNF40O75150 AP003481.1-202ENST00000608214 503 ntTSL 1 (best) BASIC8.02□□□□□ -1.13
RNF40O75150 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC8.02□□□□□ -1.13
RNF40O75150 AC022418.1-201ENST00000624118 445 ntBASIC8.02□□□□□ -1.13
RNF40O75150 AP2B1-215ENST00000616681 3267 ntTSL 2 BASIC8.02□□□□□ -1.13
RNF40O75150 GRIA4-212ENST00000530497 5059 ntAPPRIS P1 TSL 1 (best) BASIC8.02□□□□□ -1.13
RNF40O75150 CS-212ENST00000548567 3057 ntTSL 1 (best) BASIC8.02□□□□□ -1.13
RNF40O75150 AC016251.2-201ENST00000623393 3089 ntBASIC8.02□□□□□ -1.13
RNF40O75150 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC8.02□□□□□ -1.13
RNF40O75150 SERPINA6-201ENST00000341584 1534 ntAPPRIS P1 TSL 1 (best) BASIC8.02□□□□□ -1.13
Retrieved 100 of 98,524 protein–RNA pairs in 87.4 ms