Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 GRIK1-201ENST00000327783 3179 ntTSL 5 BASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 RAB9B-201ENST00000243298 3748 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 INTS6P1-201ENST00000504674 2530 ntBASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 FILIP1L-202ENST00000354552 3970 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 DNM1P47-202ENST00000561463 15043 ntTSL 5 BASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 LINC00939-201ENST00000502479 4972 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
SMC1BQ8NDV3 TMEM67-205ENST00000453321 4651 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 PDZRN4-203ENST00000539469 3041 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 UGT2A1-206ENST00000514019 2376 ntTSL 2 BASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 TRAT1-201ENST00000295756 1919 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 PHEX-AS1-201ENST00000424650 1906 ntTSL 2 BASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 MMP13-201ENST00000260302 2716 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 RFX3-204ENST00000382004 9307 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 RUFY3-202ENST00000381006 3098 ntAPPRIS P1 TSL 5 BASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 GCNT2-201ENST00000265012 4214 ntAPPRIS P3 TSL 1 (best) BASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 GPR52-201ENST00000367685 1088 ntAPPRIS P1 BASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 KRTAP22-2-201ENST00000382830 293 ntAPPRIS P1 BASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 PDC-201ENST00000391997 1242 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 NPM1P38-201ENST00000403835 865 ntBASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 AP002530.1-201ENST00000405705 684 ntBASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 UBE2V1P11-201ENST00000411559 285 ntBASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 ABCA12-203ENST00000412081 485 ntTSL 2 BASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 AL445183.3-201ENST00000414168 502 ntBASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 XKRYP1-201ENST00000423438 492 ntBASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 OR5W1P-201ENST00000423705 938 ntBASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 NANOGP5-201ENST00000424456 877 ntBASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 AC093422.3-201ENST00000428506 305 ntBASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 XKRYP2-201ENST00000432915 492 ntBASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 AL133465.1-201ENST00000432942 512 ntTSL 3 BASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 AC092625.1-201ENST00000442706 393 ntTSL 3 BASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 RN7SL352P-201ENST00000466002 277 ntBASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 PLSCR5-203ENST00000492200 1058 ntAPPRIS P1 TSL 5 BASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 BMPR1B-204ENST00000502683 567 ntTSL 4 BASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 AC079226.2-201ENST00000509283 518 ntTSL 2 BASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 AC074255.1-201ENST00000511259 501 ntBASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 AC034223.2-201ENST00000511840 425 ntTSL 3 BASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 AP002336.3-201ENST00000526017 367 ntTSL 3 BASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 KCTD9P4-201ENST00000526766 1166 ntBASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 PIWIL4-203ENST00000537419 831 ntTSL 2 BASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 AC073916.1-201ENST00000545095 130 ntBASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 LINC02451-202ENST00000548764 579 ntTSL 4 BASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 AC090109.1-201ENST00000548885 819 ntTSL 3 BASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 AC008147.1-201ENST00000551284 325 ntTSL 3 BASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 EDDM3DP-201ENST00000554692 434 ntBASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 AC012181.3-201ENST00000565861 601 ntTSL 4 BASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 TEX26-AS1-204ENST00000585582 853 ntTSL 5 BASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 AC097717.1-230ENST00000597051 738 ntTSL 3 BASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 AC097717.1-211ENST00000600604 687 ntTSL 5 BASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 AL450336.1-201ENST00000605180 586 ntBASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 AL671511.2-201ENST00000611838 659 ntTSL 2 BASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 AC090607.5-201ENST00000615692 224 ntBASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 CCL4L2-215ENST00000620055 537 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 CCL4L2-217ENST00000620250 667 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 ZNF479-203ENST00000620639 1239 ntTSL 5 BASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 CRNDE-213ENST00000635991 546 ntTSL 5 BASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 CCT6B-203ENST00000436961 1639 ntTSL 2 BASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 CCR2-201ENST00000292301 2671 ntTSL 5 BASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 CLCC1-205ENST00000369969 4343 ntTSL 5 BASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 LINC02119-201ENST00000508853 2573 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 SYT14-207ENST00000629778 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 TTI1-203ENST00000449821 3791 ntAPPRIS P1 TSL 2 BASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 VPS13B-203ENST00000358544 14094 ntAPPRIS P4 TSL 1 (best) BASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 IFIT1-202ENST00000546318 4613 ntTSL 3 BASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 AC092111.2-201ENST00000611627 1414 ntBASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 MECOM-209ENST00000472280 3593 ntTSL 5 BASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 ZNF268-205ENST00000536435 13475 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 AC090220.1-201ENST00000593078 1699 ntBASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 UGT2A2-202ENST00000604629 1676 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 AL731556.1-201ENST00000394628 3711 ntBASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC6.74□□□□□ -1.33
SMC1BQ8NDV3 PTER-202ENST00000378000 3777 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
SMC1BQ8NDV3 CENPI-204ENST00000423383 2314 ntAPPRIS P3 TSL 5 BASIC6.73□□□□□ -1.33
SMC1BQ8NDV3 TMC5-201ENST00000219821 3687 ntAPPRIS P3 TSL 1 (best) BASIC6.73□□□□□ -1.33
SMC1BQ8NDV3 TBC1D23-202ENST00000394144 3677 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
SMC1BQ8NDV3 LINC00704-201ENST00000430998 1478 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
SMC1BQ8NDV3 FBXO3-208ENST00000530401 7410 ntTSL 2 BASIC6.73□□□□□ -1.33
SMC1BQ8NDV3 BRCA1-203ENST00000357654 7094 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
SMC1BQ8NDV3 CLCA1-202ENST00000394711 3118 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
SMC1BQ8NDV3 EPS8-209ENST00000542903 1858 ntTSL 2 BASIC6.73□□□□□ -1.33
SMC1BQ8NDV3 KCNH7-205ENST00000621889 1893 ntTSL 5 BASIC6.73□□□□□ -1.33
SMC1BQ8NDV3 PLEKHS1-205ENST00000369312 3443 ntTSL 2 BASIC6.73□□□□□ -1.33
SMC1BQ8NDV3 MGP-201ENST00000228938 694 ntTSL 3 BASIC6.73□□□□□ -1.33
SMC1BQ8NDV3 FAM32BP-201ENST00000344033 333 ntBASIC6.73□□□□□ -1.33
SMC1BQ8NDV3 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
SMC1BQ8NDV3 RNA5SP30-201ENST00000365552 115 ntBASIC6.73□□□□□ -1.33
SMC1BQ8NDV3 XKRYP4-201ENST00000414395 483 ntBASIC6.73□□□□□ -1.33
SMC1BQ8NDV3 P2RY10P2-201ENST00000416730 913 ntBASIC6.73□□□□□ -1.33
SMC1BQ8NDV3 MTCYBP29-201ENST00000436327 1006 ntBASIC6.73□□□□□ -1.33
SMC1BQ8NDV3 C1orf143-201ENST00000443836 762 ntTSL 2 BASIC6.73□□□□□ -1.33
SMC1BQ8NDV3 AL591719.1-201ENST00000444669 744 ntBASIC6.73□□□□□ -1.33
SMC1BQ8NDV3 AL358794.1-201ENST00000445689 381 ntBASIC6.73□□□□□ -1.33
SMC1BQ8NDV3 LINC01809-201ENST00000448431 303 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 99.6 ms