Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AP003497.2-201ENST00000624220 967 ntBASIC5.85□□□□□ -1.47
BRCA1P38398 CYP1D1P-201ENST00000416662 1433 ntBASIC5.85□□□□□ -1.47
BRCA1P38398 AC017104.4-201ENST00000636283 1592 ntBASIC5.85□□□□□ -1.47
BRCA1P38398 ANKRD31-203ENST00000506364 6207 ntAPPRIS ALT2 TSL 5 BASIC5.85□□□□□ -1.47
BRCA1P38398 ESRRG-224ENST00000616180 5194 ntAPPRIS P1 TSL 5 BASIC5.85□□□□□ -1.47
BRCA1P38398 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC5.84□□□□□ -1.47
BRCA1P38398 ATP13A4-202ENST00000342695 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
BRCA1P38398 ADCY10-205ENST00000545172 4966 ntTSL 2 BASIC5.84□□□□□ -1.47
BRCA1P38398 OR14C36-201ENST00000317861 939 ntAPPRIS P1 BASIC5.84□□□□□ -1.47
BRCA1P38398 RNU1-94P-201ENST00000362627 173 ntBASIC5.84□□□□□ -1.47
BRCA1P38398 TRAV35-201ENST00000390462 330 ntBASIC5.84□□□□□ -1.47
BRCA1P38398 RPS29P17-201ENST00000430795 166 ntBASIC5.84□□□□□ -1.47
BRCA1P38398 LINC01704-202ENST00000442358 649 ntTSL 3 BASIC5.84□□□□□ -1.47
BRCA1P38398 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC5.84□□□□□ -1.47
BRCA1P38398 LINC02050-201ENST00000473938 712 ntTSL 3 BASIC5.84□□□□□ -1.47
BRCA1P38398 MTND4LP2-201ENST00000502312 285 ntBASIC5.84□□□□□ -1.47
BRCA1P38398 AC079064.1-201ENST00000528365 362 ntBASIC5.84□□□□□ -1.47
BRCA1P38398 AP003557.1-202ENST00000528978 562 ntTSL 4 BASIC5.84□□□□□ -1.47
BRCA1P38398 PTH-202ENST00000529816 799 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.47
BRCA1P38398 AC011468.1-201ENST00000569091 675 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
BRCA1P38398 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC5.84□□□□□ -1.47
BRCA1P38398 ARF4P1-201ENST00000605447 541 ntBASIC5.84□□□□□ -1.47
BRCA1P38398 AL356056.1-205ENST00000608904 651 ntTSL 5 BASIC5.84□□□□□ -1.47
BRCA1P38398 AL161912.2-201ENST00000565707 3007 ntBASIC5.84□□□□□ -1.47
BRCA1P38398 SLC4A10-202ENST00000375514 5710 ntAPPRIS ALT1 TSL 2 BASIC5.84□□□□□ -1.47
BRCA1P38398 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC5.84□□□□□ -1.47
BRCA1P38398 DOCK9-203ENST00000376460 7549 ntAPPRIS P2 TSL 5 BASIC5.84□□□□□ -1.47
BRCA1P38398 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
BRCA1P38398 ZNF559-201ENST00000317221 2732 ntTSL 2 BASIC5.84□□□□□ -1.47
BRCA1P38398 ZDBF2-201ENST00000374423 10286 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
BRCA1P38398 STMN2-201ENST00000220876 2223 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.48
BRCA1P38398 GAS2L3-203ENST00000539410 2229 ntAPPRIS P1 TSL 2 BASIC5.84□□□□□ -1.48
BRCA1P38398 OFD1P9Y-201ENST00000417699 1491 ntBASIC5.84□□□□□ -1.48
BRCA1P38398 LARP4-203ENST00000398473 6427 ntAPPRIS P3 TSL 1 (best) BASIC5.84□□□□□ -1.48
BRCA1P38398 CAPRIN2-202ENST00000395805 4156 ntTSL 1 (best) BASIC5.84□□□□□ -1.48
BRCA1P38398 SOX2-OT-218ENST00000498731 3576 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
BRCA1P38398 RNU6-761P-201ENST00000384148 107 ntBASIC5.83□□□□□ -1.48
BRCA1P38398 RPS26P8-201ENST00000393490 348 ntBASIC5.83□□□□□ -1.48
BRCA1P38398 LINC00993-201ENST00000420453 540 ntBASIC5.83□□□□□ -1.48
BRCA1P38398 AL139275.2-201ENST00000444731 539 ntTSL 3 BASIC5.83□□□□□ -1.48
BRCA1P38398 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC5.83□□□□□ -1.48
BRCA1P38398 HAX1-208ENST00000483970 1151 ntTSL 2 BASIC5.83□□□□□ -1.48
BRCA1P38398 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC5.83□□□□□ -1.48
BRCA1P38398 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
BRCA1P38398 AP001804.1-201ENST00000526868 919 ntBASIC5.83□□□□□ -1.48
BRCA1P38398 MRPS21P9-201ENST00000571150 257 ntBASIC5.83□□□□□ -1.48
BRCA1P38398 LINC01440-205ENST00000608080 737 ntTSL 3 BASIC5.83□□□□□ -1.48
BRCA1P38398 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC5.83□□□□□ -1.48
BRCA1P38398 AL035461.2-201ENST00000619201 524 ntBASIC5.83□□□□□ -1.48
BRCA1P38398 AC005618.4-201ENST00000625053 554 ntBASIC5.83□□□□□ -1.48
BRCA1P38398 AC008758.3-201ENST00000507003 1829 ntBASIC5.83□□□□□ -1.48
BRCA1P38398 ZNF33A-203ENST00000432900 3994 ntAPPRIS ALT2 TSL 1 (best) BASIC5.83□□□□□ -1.48
BRCA1P38398 MAPK10-349ENST00000641767 3661 ntBASIC5.83□□□□□ -1.48
BRCA1P38398 CALU-203ENST00000479257 2572 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
BRCA1P38398 MAK-204ENST00000536370 3767 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
BRCA1P38398 SCN2A-215ENST00000637266 8610 ntAPPRIS ALT1 TSL 5 BASIC5.83□□□□□ -1.48
BRCA1P38398 SLC12A6-204ENST00000397707 4194 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
BRCA1P38398 PCGF5-205ENST00000614189 7037 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
BRCA1P38398 NDUFS1-201ENST00000233190 11819 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
BRCA1P38398 NBPF12-203ENST00000611443 5594 ntTSL 5 BASIC5.83□□□□□ -1.48
BRCA1P38398 RNF133-201ENST00000340112 1445 ntAPPRIS P1 BASIC5.83□□□□□ -1.48
BRCA1P38398 ZNF639-201ENST00000326361 6064 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
BRCA1P38398 LINC01400-201ENST00000426358 947 ntTSL 3 BASIC5.83□□□□□ -1.48
BRCA1P38398 AL590399.2-201ENST00000427536 309 ntBASIC5.83□□□□□ -1.48
BRCA1P38398 AL162591.2-201ENST00000449634 317 ntBASIC5.83□□□□□ -1.48
BRCA1P38398 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC5.83□□□□□ -1.48
BRCA1P38398 AC097173.2-201ENST00000518701 474 ntTSL 3 BASIC5.83□□□□□ -1.48
BRCA1P38398 PRH1-206ENST00000543626 710 ntAPPRIS P2 TSL 5 BASIC5.83□□□□□ -1.48
BRCA1P38398 DAZAP2-209ENST00000549732 601 ntTSL 2 BASIC5.83□□□□□ -1.48
BRCA1P38398 AP005901.4-201ENST00000577336 569 ntBASIC5.83□□□□□ -1.48
BRCA1P38398 AC011477.5-201ENST00000586571 259 ntBASIC5.83□□□□□ -1.48
BRCA1P38398 AL049536.1-201ENST00000625043 744 ntBASIC5.83□□□□□ -1.48
BRCA1P38398 INTS6-220ENST00000497989 3022 ntTSL 2 BASIC5.83□□□□□ -1.48
BRCA1P38398 MAK-203ENST00000474039 3859 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
BRCA1P38398 AL355488.2-201ENST00000609909 2850 ntBASIC5.83□□□□□ -1.48
BRCA1P38398 LGI1-219ENST00000636155 1618 ntTSL 5 BASIC5.83□□□□□ -1.48
BRCA1P38398 KIAA1109-201ENST00000264501 15896 ntAPPRIS P1 TSL 5 BASIC5.82□□□□□ -1.48
BRCA1P38398 MBNL2-204ENST00000397601 4487 ntTSL 5 BASIC5.82□□□□□ -1.48
BRCA1P38398 ZNF528-203ENST00000391788 4209 ntTSL 2 BASIC5.82□□□□□ -1.48
BRCA1P38398 MDM4-215ENST00000614459 9782 ntTSL 5 BASIC5.82□□□□□ -1.48
BRCA1P38398 ROR1-204ENST00000545203 5362 ntAPPRIS ALT2 TSL 5 BASIC5.82□□□□□ -1.48
BRCA1P38398 SETDB2-201ENST00000258672 2138 ntTSL 5 BASIC5.82□□□□□ -1.48
BRCA1P38398 AC092681.1-201ENST00000297369 291 ntBASIC5.82□□□□□ -1.48
BRCA1P38398 CRYZ-203ENST00000370871 1292 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
BRCA1P38398 GTSF1L-201ENST00000373003 835 ntAPPRIS P3 BASIC5.82□□□□□ -1.48
BRCA1P38398 OR1F12-201ENST00000402365 945 ntBASIC5.82□□□□□ -1.48
BRCA1P38398 MRPL35P2-201ENST00000448009 511 ntBASIC5.82□□□□□ -1.48
BRCA1P38398 RNA5SP116-201ENST00000516132 98 ntBASIC5.82□□□□□ -1.48
BRCA1P38398 LINC02444-201ENST00000550723 1256 ntTSL 1 (best) BASIC5.82□□□□□ -1.48
BRCA1P38398 PCED1B-AS1-210ENST00000552975 378 ntTSL 2 BASIC5.82□□□□□ -1.48
BRCA1P38398 AC092132.1-201ENST00000570859 352 ntTSL 3 BASIC5.82□□□□□ -1.48
BRCA1P38398 MIR3158-1-201ENST00000583596 81 ntBASIC5.82□□□□□ -1.48
BRCA1P38398 LINC00632-204ENST00000602830 597 ntTSL 4 BASIC5.82□□□□□ -1.48
BRCA1P38398 AC005261.4-201ENST00000600047 1385 ntBASIC5.82□□□□□ -1.48
BRCA1P38398 PSD3-218ENST00000523619 8145 ntAPPRIS ALT2 TSL 1 (best) BASIC5.82□□□□□ -1.48
BRCA1P38398 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC5.82□□□□□ -1.48
BRCA1P38398 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
BRCA1P38398 C6orf10-210ENST00000617061 1904 ntAPPRIS ALT2 TSL 5 BASIC5.82□□□□□ -1.48
BRCA1P38398 WNK3-203ENST00000375169 11172 ntAPPRIS ALT1 TSL 5 BASIC5.82□□□□□ -1.48
BRCA1P38398 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC5.82□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 71.5 ms