Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 LINC00535-202ENST00000517785 264 ntTSL 3 BASIC6.27□□□□□ -1.41
SMARCA1P28370 AC079209.1-202ENST00000521953 522 ntTSL 3 BASIC6.27□□□□□ -1.41
SMARCA1P28370 AC104257.1-202ENST00000524275 884 ntTSL 3 BASIC6.27□□□□□ -1.41
SMARCA1P28370 ST3GAL3-233ENST00000531816 344 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
SMARCA1P28370 TWF1-207ENST00000548315 1170 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
SMARCA1P28370 AC068643.1-201ENST00000548594 755 ntTSL 5 BASIC6.27□□□□□ -1.41
SMARCA1P28370 AC012404.2-201ENST00000558572 481 ntTSL 3 BASIC6.27□□□□□ -1.41
SMARCA1P28370 AC092078.2-201ENST00000560900 581 ntTSL 4 BASIC6.27□□□□□ -1.41
SMARCA1P28370 MTCO2P2-201ENST00000591258 225 ntBASIC6.27□□□□□ -1.41
SMARCA1P28370 AC005757.1-201ENST00000591432 472 ntTSL 4 BASIC6.27□□□□□ -1.41
SMARCA1P28370 AP001160.4-201ENST00000596971 382 ntBASIC6.27□□□□□ -1.41
SMARCA1P28370 LINC01198-207ENST00000598084 881 ntTSL 5 BASIC6.27□□□□□ -1.41
SMARCA1P28370 BNIP3P32-201ENST00000600015 554 ntBASIC6.27□□□□□ -1.41
SMARCA1P28370 IGLCOR22-2-201ENST00000605398 313 ntBASIC6.27□□□□□ -1.41
SMARCA1P28370 AL034549.1-201ENST00000615120 578 ntTSL 2 BASIC6.27□□□□□ -1.41
SMARCA1P28370 AC109583.2-201ENST00000617367 129 ntBASIC6.27□□□□□ -1.41
SMARCA1P28370 AC084816.1-212ENST00000625240 1114 ntTSL 5 BASIC6.27□□□□□ -1.41
SMARCA1P28370 AC074101.1-201ENST00000637861 241 ntBASIC6.27□□□□□ -1.41
SMARCA1P28370 LINC00032-203ENST00000640247 1374 ntTSL 5 BASIC6.27□□□□□ -1.41
SMARCA1P28370 ZBTB25-201ENST00000394715 2094 ntAPPRIS P1 TSL 2 BASIC6.27□□□□□ -1.41
SMARCA1P28370 DDX58-201ENST00000379868 4089 ntTSL 5 BASIC6.27□□□□□ -1.41
SMARCA1P28370 ADAM29-203ENST00000445694 3244 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
SMARCA1P28370 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
SMARCA1P28370 GPR1-201ENST00000407325 2295 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
SMARCA1P28370 RYR3-208ENST00000622037 15564 ntAPPRIS ALT2 TSL 5 BASIC6.27□□□□□ -1.41
SMARCA1P28370 AC245100.4-204ENST00000635587 1555 ntTSL 5 BASIC6.27□□□□□ -1.41
SMARCA1P28370 CIR1P2-201ENST00000514821 1342 ntBASIC6.26□□□□□ -1.41
SMARCA1P28370 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
SMARCA1P28370 MCM10-202ENST00000378714 4547 ntAPPRIS ALT2 TSL 1 (best) BASIC6.26□□□□□ -1.41
SMARCA1P28370 DCN-204ENST00000425043 1438 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
SMARCA1P28370 CLDN12-203ENST00000394605 3488 ntAPPRIS P1 TSL 2 BASIC6.26□□□□□ -1.41
SMARCA1P28370 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC6.26□□□□□ -1.41
SMARCA1P28370 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
SMARCA1P28370 CYP4Z2P-201ENST00000423332 1512 ntBASIC6.26□□□□□ -1.41
SMARCA1P28370 ZNF90P1-201ENST00000480493 1951 ntBASIC6.26□□□□□ -1.41
SMARCA1P28370 ARHGAP20-204ENST00000528829 5880 ntAPPRIS ALT2 TSL 1 (best) BASIC6.26□□□□□ -1.41
SMARCA1P28370 RFX3-204ENST00000382004 9307 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
SMARCA1P28370 STRBP-204ENST00000447404 6161 ntAPPRIS P1 TSL 2 BASIC6.26□□□□□ -1.41
SMARCA1P28370 OR51B6-201ENST00000380219 939 ntAPPRIS P1 BASIC6.26□□□□□ -1.41
SMARCA1P28370 RNU6-481P-201ENST00000384194 107 ntBASIC6.26□□□□□ -1.41
SMARCA1P28370 SNORD56.6-201ENST00000384569 71 ntBASIC6.26□□□□□ -1.41
SMARCA1P28370 MIR137-201ENST00000385223 102 ntBASIC6.26□□□□□ -1.41
SMARCA1P28370 TRAV10-201ENST00000390432 379 ntAPPRIS P1 BASIC6.26□□□□□ -1.41
SMARCA1P28370 AC087276.2-201ENST00000394183 183 ntTSL 5 BASIC6.26□□□□□ -1.41
SMARCA1P28370 PPIAP9-201ENST00000403866 498 ntBASIC6.26□□□□□ -1.41
SMARCA1P28370 HMGB3P19-201ENST00000403971 560 ntBASIC6.26□□□□□ -1.41
SMARCA1P28370 AL133388.1-201ENST00000404509 287 ntBASIC6.26□□□□□ -1.41
SMARCA1P28370 AL355615.1-201ENST00000406187 641 ntBASIC6.26□□□□□ -1.41
SMARCA1P28370 RNU6ATAC18P-201ENST00000408413 101 ntBASIC6.26□□□□□ -1.41
SMARCA1P28370 RN7SKP229-201ENST00000410465 302 ntBASIC6.26□□□□□ -1.41
SMARCA1P28370 TATDN1P1-201ENST00000414123 891 ntBASIC6.26□□□□□ -1.41
SMARCA1P28370 AL158825.1-201ENST00000414735 521 ntBASIC6.26□□□□□ -1.41
SMARCA1P28370 AL133325.1-201ENST00000421090 382 ntBASIC6.26□□□□□ -1.41
SMARCA1P28370 AC008164.1-201ENST00000423925 564 ntTSL 4 BASIC6.26□□□□□ -1.41
SMARCA1P28370 GUSBP6-201ENST00000434932 640 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
SMARCA1P28370 AC024597.1-201ENST00000442753 706 ntTSL 5 BASIC6.26□□□□□ -1.41
SMARCA1P28370 AL355601.1-201ENST00000444701 427 ntTSL 3 BASIC6.26□□□□□ -1.41
SMARCA1P28370 AC023271.1-201ENST00000445936 1090 ntBASIC6.26□□□□□ -1.41
SMARCA1P28370 RBMY2TP-201ENST00000451162 947 ntBASIC6.26□□□□□ -1.41
SMARCA1P28370 SEPT7P3-201ENST00000455017 621 ntBASIC6.26□□□□□ -1.41
SMARCA1P28370 AP000797.2-201ENST00000475768 606 ntBASIC6.26□□□□□ -1.41
SMARCA1P28370 RPS21P4-201ENST00000487122 248 ntBASIC6.26□□□□□ -1.41
SMARCA1P28370 DWORF-201ENST00000489090 873 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
SMARCA1P28370 AC024558.1-201ENST00000505008 528 ntBASIC6.26□□□□□ -1.41
SMARCA1P28370 RPS3A-204ENST00000506126 862 ntTSL 5 BASIC6.26□□□□□ -1.41
SMARCA1P28370 AC104012.1-201ENST00000517848 719 ntTSL 3 BASIC6.26□□□□□ -1.41
SMARCA1P28370 AC018541.1-202ENST00000518687 584 ntTSL 4 BASIC6.26□□□□□ -1.41
SMARCA1P28370 HMGB1P40-201ENST00000525121 540 ntBASIC6.26□□□□□ -1.41
SMARCA1P28370 AC134775.1-201ENST00000531268 464 ntTSL 2 BASIC6.26□□□□□ -1.41
SMARCA1P28370 AC110275.1-201ENST00000534420 623 ntAPPRIS P1 TSL 4 BASIC6.26□□□□□ -1.41
SMARCA1P28370 SMARCE1P3-201ENST00000553649 1231 ntBASIC6.26□□□□□ -1.41
SMARCA1P28370 AC025580.2-202ENST00000558536 715 ntTSL 3 BASIC6.26□□□□□ -1.41
SMARCA1P28370 LINC01904-201ENST00000564872 861 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
SMARCA1P28370 AP005209.1-201ENST00000582531 928 ntTSL 5 BASIC6.26□□□□□ -1.41
SMARCA1P28370 AP001542.3-201ENST00000587619 527 ntTSL 5 BASIC6.26□□□□□ -1.41
SMARCA1P28370 ZNF561-AS1-207ENST00000591932 676 ntTSL 5 BASIC6.26□□□□□ -1.41
SMARCA1P28370 AL606834.3-201ENST00000602615 496 ntBASIC6.26□□□□□ -1.41
SMARCA1P28370 AC019131.2-201ENST00000609071 870 ntBASIC6.26□□□□□ -1.41
SMARCA1P28370 CYCSP41-201ENST00000616920 296 ntBASIC6.26□□□□□ -1.41
SMARCA1P28370 AC009093.5-201ENST00000620963 359 ntTSL 2 BASIC6.26□□□□□ -1.41
SMARCA1P28370 AC097495.1-201ENST00000637675 546 ntAPPRIS P1 TSL 5 BASIC6.26□□□□□ -1.41
SMARCA1P28370 OR8B2-202ENST00000641451 1056 ntAPPRIS P1 BASIC6.26□□□□□ -1.41
SMARCA1P28370 GAPT-202ENST00000396776 3016 ntAPPRIS P1 TSL 2 BASIC6.26□□□□□ -1.41
SMARCA1P28370 PEX2-201ENST00000357039 4317 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
SMARCA1P28370 AC016745.2-201ENST00000608834 3443 ntBASIC6.26□□□□□ -1.41
SMARCA1P28370 ZEB2-241ENST00000637304 9158 ntTSL 5 BASIC6.26□□□□□ -1.41
SMARCA1P28370 N4BP2L2-204ENST00000399396 2872 ntTSL 5 BASIC6.26□□□□□ -1.41
SMARCA1P28370 PHF7-211ENST00000615126 1328 ntTSL 5 BASIC6.25□□□□□ -1.41
SMARCA1P28370 AF127577.4-201ENST00000432230 5929 ntTSL 5 BASIC6.25□□□□□ -1.41
SMARCA1P28370 LDAH-211ENST00000541941 3807 ntTSL 2 BASIC6.25□□□□□ -1.41
SMARCA1P28370 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC6.25□□□□□ -1.41
SMARCA1P28370 AC132825.1-201ENST00000463573 2247 ntBASIC6.25□□□□□ -1.41
SMARCA1P28370 AL358975.1-203ENST00000413352 2932 ntTSL 3 BASIC6.25□□□□□ -1.41
SMARCA1P28370 MIR133A2-201ENST00000347538 102 ntBASIC6.25□□□□□ -1.41
SMARCA1P28370 NPM1-202ENST00000351986 1237 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
SMARCA1P28370 RNA5SP453-201ENST00000362503 119 ntBASIC6.25□□□□□ -1.41
SMARCA1P28370 EFCAB9-201ENST00000398186 702 ntAPPRIS P1 TSL 3 BASIC6.25□□□□□ -1.41
SMARCA1P28370 MIR1286-201ENST00000408112 78 ntBASIC6.25□□□□□ -1.41
SMARCA1P28370 AL445183.3-201ENST00000414168 502 ntBASIC6.25□□□□□ -1.41
SMARCA1P28370 SMIM2-IT1-201ENST00000415082 478 ntTSL 3 BASIC6.25□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 106.7 ms