Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 CR769775.2-201ENST00000417850 891 ntTSL 3 BASIC4.6□□□□□ -1.67
VPS13AQ96RL7 AL050321.1-201ENST00000432363 400 ntBASIC4.6□□□□□ -1.67
VPS13AQ96RL7 AC005412.2-201ENST00000492004 341 ntBASIC4.6□□□□□ -1.67
VPS13AQ96RL7 AP002518.2-201ENST00000544925 393 ntTSL 5 BASIC4.6□□□□□ -1.67
VPS13AQ96RL7 AC073137.1-201ENST00000605636 634 ntBASIC4.6□□□□□ -1.67
VPS13AQ96RL7 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC4.6□□□□□ -1.67
VPS13AQ96RL7 RNF123-214ENST00000629802 207 ntTSL 5 BASIC4.6□□□□□ -1.67
VPS13AQ96RL7 LINC02341-201ENST00000637043 824 ntTSL 3 BASIC4.6□□□□□ -1.67
VPS13AQ96RL7 OR2L13-201ENST00000358120 1942 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
VPS13AQ96RL7 APOB-201ENST00000233242 14121 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
VPS13AQ96RL7 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
VPS13AQ96RL7 ZCCHC2-204ENST00000586834 4765 ntAPPRIS ALT2 TSL 1 (best) BASIC4.6□□□□□ -1.67
VPS13AQ96RL7 CR1-206ENST00000400960 6959 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
VPS13AQ96RL7 CNOT1-216ENST00000569240 7660 ntAPPRIS ALT1 TSL 1 (best) BASIC4.6□□□□□ -1.67
VPS13AQ96RL7 U3.32-201ENST00000408116 212 ntBASIC4.6□□□□□ -1.67
VPS13AQ96RL7 SCP2-206ENST00000430330 938 ntTSL 2 BASIC4.6□□□□□ -1.67
VPS13AQ96RL7 LINC00189-203ENST00000447125 783 ntTSL 3 BASIC4.6□□□□□ -1.67
VPS13AQ96RL7 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC4.6□□□□□ -1.67
VPS13AQ96RL7 AC079896.1-201ENST00000455845 488 ntTSL 3 BASIC4.6□□□□□ -1.67
VPS13AQ96RL7 OR5BC1P-201ENST00000529327 739 ntBASIC4.6□□□□□ -1.67
VPS13AQ96RL7 AL121890.2-201ENST00000617644 465 ntBASIC4.6□□□□□ -1.67
VPS13AQ96RL7 AC021422.1-201ENST00000621212 473 ntBASIC4.6□□□□□ -1.67
VPS13AQ96RL7 AL136359.1-201ENST00000625090 565 ntTSL 2 BASIC4.6□□□□□ -1.67
VPS13AQ96RL7 AC025574.1-201ENST00000554784 1653 ntBASIC4.6□□□□□ -1.67
VPS13AQ96RL7 CHD8-213ENST00000557364 8137 ntAPPRIS ALT2 TSL 5 BASIC4.6□□□□□ -1.67
VPS13AQ96RL7 MIR483-201ENST00000385070 76 ntBASIC4.59□□□□□ -1.67
VPS13AQ96RL7 AC139722.1-201ENST00000512502 782 ntTSL 3 BASIC4.59□□□□□ -1.67
VPS13AQ96RL7 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC4.59□□□□□ -1.67
VPS13AQ96RL7 AC135050.5-201ENST00000576336 543 ntTSL 4 BASIC4.59□□□□□ -1.67
VPS13AQ96RL7 MIR3944-201ENST00000581277 108 ntBASIC4.59□□□□□ -1.67
VPS13AQ96RL7 AC138035.1-202ENST00000604669 683 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
VPS13AQ96RL7 AC011815.3-201ENST00000624194 473 ntBASIC4.59□□□□□ -1.67
VPS13AQ96RL7 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
VPS13AQ96RL7 KDM4C-214ENST00000536108 3406 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
VPS13AQ96RL7 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
VPS13AQ96RL7 DNAH17-202ENST00000585328 13708 ntAPPRIS ALT2 TSL 5 BASIC4.59□□□□□ -1.67
VPS13AQ96RL7 NOX4-211ENST00000528341 1899 ntTSL 2 BASIC4.59□□□□□ -1.67
VPS13AQ96RL7 ST7-204ENST00000393444 2113 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
VPS13AQ96RL7 LINC01074-201ENST00000422527 555 ntTSL 3 BASIC4.59□□□□□ -1.67
VPS13AQ96RL7 AL356276.2-201ENST00000435919 558 ntBASIC4.59□□□□□ -1.67
VPS13AQ96RL7 LINC00380-201ENST00000442478 353 ntTSL 2 BASIC4.59□□□□□ -1.67
VPS13AQ96RL7 AC006326.1-201ENST00000445465 787 ntBASIC4.59□□□□□ -1.67
VPS13AQ96RL7 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC4.59□□□□□ -1.67
VPS13AQ96RL7 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC4.59□□□□□ -1.67
VPS13AQ96RL7 FAM27B-201ENST00000610601 213 ntBASIC4.59□□□□□ -1.67
VPS13AQ96RL7 AC010632.3-201ENST00000611377 369 ntBASIC4.59□□□□□ -1.67
VPS13AQ96RL7 AC007389.5-201ENST00000629214 744 ntTSL 5 BASIC4.59□□□□□ -1.67
VPS13AQ96RL7 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC4.59□□□□□ -1.67
VPS13AQ96RL7 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC4.59□□□□□ -1.67
VPS13AQ96RL7 MYLK-206ENST00000418370 7282 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
VPS13AQ96RL7 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC4.59□□□□□ -1.67
VPS13AQ96RL7 OR5M3-202ENST00000641993 1400 ntAPPRIS P1 BASIC4.59□□□□□ -1.67
VPS13AQ96RL7 MON2-202ENST00000393630 13275 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.67
VPS13AQ96RL7 AL031595.3-201ENST00000624919 14262 ntBASIC4.59□□□□□ -1.67
VPS13AQ96RL7 RNF150-202ENST00000420921 3673 ntTSL 2 BASIC4.59□□□□□ -1.67
VPS13AQ96RL7 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC4.59□□□□□ -1.68
VPS13AQ96RL7 ZNF292-202ENST00000369577 10610 ntAPPRIS P2 TSL 1 (best) BASIC4.59□□□□□ -1.68
VPS13AQ96RL7 IL16-204ENST00000394660 9616 ntAPPRIS ALT2 TSL 2 BASIC4.59□□□□□ -1.68
VPS13AQ96RL7 CCL7-203ENST00000394630 687 ntTSL 1 (best) BASIC4.59□□□□□ -1.68
VPS13AQ96RL7 YY1P1-201ENST00000427625 668 ntBASIC4.59□□□□□ -1.68
VPS13AQ96RL7 AC034234.1-201ENST00000502993 465 ntTSL 3 BASIC4.59□□□□□ -1.68
VPS13AQ96RL7 AC008415.1-201ENST00000522189 734 ntTSL 5 BASIC4.59□□□□□ -1.68
VPS13AQ96RL7 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC4.59□□□□□ -1.68
VPS13AQ96RL7 MIR6875-201ENST00000617506 72 ntBASIC4.59□□□□□ -1.68
VPS13AQ96RL7 AC112484.5-201ENST00000624189 228 ntBASIC4.59□□□□□ -1.68
VPS13AQ96RL7 AL139254.3-201ENST00000641097 674 ntBASIC4.59□□□□□ -1.68
VPS13AQ96RL7 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC4.58□□□□□ -1.68
VPS13AQ96RL7 CTNND1-204ENST00000361796 6226 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
VPS13AQ96RL7 NPIPB9-201ENST00000357796 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
VPS13AQ96RL7 ATF7-202ENST00000456903 5218 ntAPPRIS P2 TSL 5 BASIC4.58□□□□□ -1.68
VPS13AQ96RL7 SLC5A12-201ENST00000280467 2269 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
VPS13AQ96RL7 ZNF812P-201ENST00000457674 1694 ntBASIC4.58□□□□□ -1.68
VPS13AQ96RL7 HIST1H2APS3-201ENST00000403259 134 ntBASIC4.58□□□□□ -1.68
VPS13AQ96RL7 MTUS2-AS2-202ENST00000434779 720 ntTSL 3 BASIC4.58□□□□□ -1.68
VPS13AQ96RL7 CYCSP43-201ENST00000438233 310 ntBASIC4.58□□□□□ -1.68
VPS13AQ96RL7 AC022336.1-201ENST00000475510 337 ntBASIC4.58□□□□□ -1.68
VPS13AQ96RL7 LINC00903-201ENST00000497854 223 ntTSL 3 BASIC4.58□□□□□ -1.68
VPS13AQ96RL7 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC4.58□□□□□ -1.68
VPS13AQ96RL7 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC4.58□□□□□ -1.68
VPS13AQ96RL7 AC091979.2-201ENST00000607514 214 ntBASIC4.58□□□□□ -1.68
VPS13AQ96RL7 MIR6839-201ENST00000620425 113 ntBASIC4.58□□□□□ -1.68
VPS13AQ96RL7 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
VPS13AQ96RL7 MDM4-207ENST00000454264 9926 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
VPS13AQ96RL7 CPNE3-203ENST00000517490 4865 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
VPS13AQ96RL7 NAIP-208ENST00000517649 6124 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
VPS13AQ96RL7 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
VPS13AQ96RL7 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC4.58□□□□□ -1.68
VPS13AQ96RL7 MTCO1P54-201ENST00000430139 712 ntBASIC4.58□□□□□ -1.68
VPS13AQ96RL7 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC4.58□□□□□ -1.68
VPS13AQ96RL7 AC007389.2-201ENST00000434630 306 ntBASIC4.58□□□□□ -1.68
VPS13AQ96RL7 AL450023.3-201ENST00000440592 271 ntBASIC4.58□□□□□ -1.68
VPS13AQ96RL7 AL157884.3-201ENST00000448273 1184 ntBASIC4.58□□□□□ -1.68
VPS13AQ96RL7 LINC01312-202ENST00000456347 813 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
VPS13AQ96RL7 RPS27L-205ENST00000462430 681 ntTSL 2 BASIC4.58□□□□□ -1.68
VPS13AQ96RL7 AP003497.2-201ENST00000624220 967 ntBASIC4.58□□□□□ -1.68
VPS13AQ96RL7 TXK-201ENST00000264316 2914 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
VPS13AQ96RL7 AIMP1-202ENST00000394701 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
VPS13AQ96RL7 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC4.58□□□□□ -1.68
VPS13AQ96RL7 UG0898H09-202ENST00000623646 7040 ntBASIC4.58□□□□□ -1.68
VPS13AQ96RL7 ELOVL7-203ENST00000505959 4165 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 90.7 ms