Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AL133480.1-201ENST00000411561 638 ntTSL 2 BASIC5.5□□□□□ -1.53
CCDC140Q96MF4 RPL12P10-201ENST00000413498 498 ntBASIC5.5□□□□□ -1.53
CCDC140Q96MF4 TPMTP2-201ENST00000414372 726 ntBASIC5.5□□□□□ -1.53
CCDC140Q96MF4 AC002064.2-201ENST00000420245 289 ntTSL 3 BASIC5.5□□□□□ -1.53
CCDC140Q96MF4 MTCYBP24-201ENST00000420387 1106 ntBASIC5.5□□□□□ -1.53
CCDC140Q96MF4 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC5.5□□□□□ -1.53
CCDC140Q96MF4 COX6CP17-201ENST00000421389 185 ntBASIC5.5□□□□□ -1.53
CCDC140Q96MF4 AC069157.1-201ENST00000421749 137 ntBASIC5.5□□□□□ -1.53
CCDC140Q96MF4 TRBV29-1-201ENST00000422143 402 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
CCDC140Q96MF4 LINC00266-1-202ENST00000425473 629 ntTSL 5 BASIC5.5□□□□□ -1.53
CCDC140Q96MF4 CYP4F32P-201ENST00000426492 504 ntBASIC5.5□□□□□ -1.53
CCDC140Q96MF4 ZNF863P-201ENST00000426746 417 ntBASIC5.5□□□□□ -1.53
CCDC140Q96MF4 ELOCP14-201ENST00000428070 331 ntBASIC5.5□□□□□ -1.53
CCDC140Q96MF4 AC093019.2-201ENST00000432294 384 ntTSL 3 BASIC5.5□□□□□ -1.53
CCDC140Q96MF4 FCF1P1-201ENST00000432690 571 ntBASIC5.5□□□□□ -1.53
CCDC140Q96MF4 ARPC3P1-201ENST00000437218 533 ntBASIC5.5□□□□□ -1.53
CCDC140Q96MF4 HMGB1P31-201ENST00000437242 427 ntBASIC5.5□□□□□ -1.53
CCDC140Q96MF4 AC019185.3-201ENST00000438805 323 ntBASIC5.5□□□□□ -1.53
CCDC140Q96MF4 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC5.5□□□□□ -1.53
CCDC140Q96MF4 ELOCP7-201ENST00000439968 331 ntBASIC5.5□□□□□ -1.53
CCDC140Q96MF4 RPL23AP16-201ENST00000441715 421 ntBASIC5.5□□□□□ -1.53
CCDC140Q96MF4 CEACAMP9-201ENST00000442990 513 ntBASIC5.5□□□□□ -1.53
CCDC140Q96MF4 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC5.5□□□□□ -1.53
CCDC140Q96MF4 AC107072.2-201ENST00000452412 555 ntTSL 3 BASIC5.5□□□□□ -1.53
CCDC140Q96MF4 IQCG-204ENST00000453254 1230 ntTSL 2 BASIC5.5□□□□□ -1.53
CCDC140Q96MF4 AC026410.2-201ENST00000460281 156 ntBASIC5.5□□□□□ -1.53
CCDC140Q96MF4 WBP1LP1-201ENST00000460451 896 ntBASIC5.5□□□□□ -1.53
CCDC140Q96MF4 KBTBD8-202ENST00000460576 984 ntTSL 2 BASIC5.5□□□□□ -1.53
CCDC140Q96MF4 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
CCDC140Q96MF4 TECRP2-201ENST00000503270 928 ntBASIC5.5□□□□□ -1.53
CCDC140Q96MF4 NACAP6-201ENST00000509572 622 ntBASIC5.5□□□□□ -1.53
CCDC140Q96MF4 AC009646.1-201ENST00000510455 318 ntBASIC5.5□□□□□ -1.53
CCDC140Q96MF4 AC133634.1-201ENST00000517695 566 ntTSL 3 BASIC5.5□□□□□ -1.53
CCDC140Q96MF4 AF117829.1-202ENST00000524166 836 ntTSL 3 BASIC5.5□□□□□ -1.53
CCDC140Q96MF4 AC024405.1-201ENST00000532521 1042 ntBASIC5.5□□□□□ -1.53
CCDC140Q96MF4 LINC01493-202ENST00000533575 581 ntTSL 4 BASIC5.5□□□□□ -1.53
CCDC140Q96MF4 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC5.5□□□□□ -1.53
CCDC140Q96MF4 OVCH1-AS1-202ENST00000550906 654 ntTSL 3 BASIC5.5□□□□□ -1.53
CCDC140Q96MF4 LSM6P2-201ENST00000552208 177 ntBASIC5.5□□□□□ -1.53
CCDC140Q96MF4 AL390334.1-201ENST00000556395 450 ntBASIC5.5□□□□□ -1.53
CCDC140Q96MF4 AC013356.3-201ENST00000558601 584 ntTSL 3 BASIC5.5□□□□□ -1.53
CCDC140Q96MF4 AC022898.1-202ENST00000560864 806 ntTSL 2 BASIC5.5□□□□□ -1.53
CCDC140Q96MF4 AC012146.2-201ENST00000576545 416 ntBASIC5.5□□□□□ -1.53
CCDC140Q96MF4 MIR1273F-201ENST00000580581 99 ntBASIC5.5□□□□□ -1.53
CCDC140Q96MF4 AC090312.1-201ENST00000580637 348 ntBASIC5.5□□□□□ -1.53
CCDC140Q96MF4 TTN-AS1-237ENST00000590743 812 ntTSL 5 BASIC5.5□□□□□ -1.53
CCDC140Q96MF4 RNASEH2B-AS1-202ENST00000593369 648 ntTSL 5 BASIC5.5□□□□□ -1.53
CCDC140Q96MF4 EXOSC3P2-201ENST00000594464 497 ntBASIC5.5□□□□□ -1.53
CCDC140Q96MF4 ZNF431-206ENST00000599296 586 ntTSL 5 BASIC5.5□□□□□ -1.53
CCDC140Q96MF4 AC024451.4-201ENST00000602578 752 ntBASIC5.5□□□□□ -1.53
CCDC140Q96MF4 AC018695.5-201ENST00000605872 315 ntBASIC5.5□□□□□ -1.53
CCDC140Q96MF4 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC5.5□□□□□ -1.53
CCDC140Q96MF4 UBE2Q2P2-203ENST00000613592 761 ntBASIC5.5□□□□□ -1.53
CCDC140Q96MF4 MIR6731-201ENST00000614863 72 ntBASIC5.5□□□□□ -1.53
CCDC140Q96MF4 AL589745.2-201ENST00000616366 555 ntTSL 4 BASIC5.5□□□□□ -1.53
CCDC140Q96MF4 pRNA.9-201ENST00000618609 89 ntBASIC5.5□□□□□ -1.53
CCDC140Q96MF4 AC136475.10-201ENST00000620253 385 ntBASIC5.5□□□□□ -1.53
CCDC140Q96MF4 AC092794.2-201ENST00000620933 563 ntBASIC5.5□□□□□ -1.53
CCDC140Q96MF4 MIR548A1HG-202ENST00000637804 784 ntTSL 5 BASIC5.5□□□□□ -1.53
CCDC140Q96MF4 UTY-212ENST00000545955 6817 ntAPPRIS P5 TSL 1 (best) BASIC5.5□□□□□ -1.53
CCDC140Q96MF4 TMEM135-202ENST00000340353 3938 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
CCDC140Q96MF4 GBA3-206ENST00000610628 2154 ntAPPRIS ALT2 TSL 5 BASIC5.5□□□□□ -1.53
CCDC140Q96MF4 CPNE3-203ENST00000517490 4865 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
CCDC140Q96MF4 ZMYND11-204ENST00000381604 4066 ntTSL 5 BASIC5.5□□□□□ -1.53
CCDC140Q96MF4 DPPA4-201ENST00000335658 2817 ntAPPRIS P2 TSL 1 (best) BASIC5.5□□□□□ -1.53
CCDC140Q96MF4 DCP2-201ENST00000389063 8947 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
CCDC140Q96MF4 LINC01537-201ENST00000450804 2450 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
CCDC140Q96MF4 TAF7L-201ENST00000324762 2107 ntAPPRIS ALT2 TSL 2 BASIC5.5□□□□□ -1.53
CCDC140Q96MF4 ZNF710-AS1-202ENST00000620791 2133 ntBASIC5.5□□□□□ -1.53
CCDC140Q96MF4 SEC31A-207ENST00000443462 4042 ntTSL 2 BASIC5.5□□□□□ -1.53
CCDC140Q96MF4 AC005225.5-201ENST00000623547 2225 ntBASIC5.5□□□□□ -1.53
CCDC140Q96MF4 FARSBP1-201ENST00000435808 1778 ntBASIC5.5□□□□□ -1.53
CCDC140Q96MF4 OR2T2-203ENST00000642130 3331 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
CCDC140Q96MF4 ZNF549-204ENST00000602149 5505 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
CCDC140Q96MF4 FBLN5-205ENST00000556154 1875 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
CCDC140Q96MF4 DMTF1-213ENST00000432937 2411 ntTSL 2 BASIC5.49□□□□□ -1.53
CCDC140Q96MF4 ATP1B4-203ENST00000539306 4644 ntTSL 2 BASIC5.49□□□□□ -1.53
CCDC140Q96MF4 CTNND1-218ENST00000528232 5745 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
CCDC140Q96MF4 SLC3A1-206ENST00000409740 1418 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
CCDC140Q96MF4 FREM2-201ENST00000280481 16070 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
CCDC140Q96MF4 BPIFC-203ENST00000397452 2091 ntAPPRIS P1 TSL 5 BASIC5.49□□□□□ -1.53
CCDC140Q96MF4 LINC02019-201ENST00000608605 2060 ntBASIC5.49□□□□□ -1.53
CCDC140Q96MF4 DLG2-203ENST00000376104 5139 ntAPPRIS P3 TSL 1 (best) BASIC5.49□□□□□ -1.53
CCDC140Q96MF4 OR2AH1P-202ENST00000641232 2744 ntBASIC5.49□□□□□ -1.53
CCDC140Q96MF4 AP000473.2-201ENST00000602659 1537 ntBASIC5.49□□□□□ -1.53
CCDC140Q96MF4 ARFGEF3-201ENST00000251691 14877 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
CCDC140Q96MF4 SELE-204ENST00000367776 3576 ntTSL 5 BASIC5.49□□□□□ -1.53
CCDC140Q96MF4 SELE-205ENST00000367777 3576 ntTSL 5 BASIC5.49□□□□□ -1.53
CCDC140Q96MF4 PTK2-228ENST00000521059 4405 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
CCDC140Q96MF4 AP003175.1-201ENST00000641383 6658 ntBASIC5.49□□□□□ -1.53
CCDC140Q96MF4 NRCAM-201ENST00000351718 6228 ntAPPRIS P3 TSL 1 (best) BASIC5.49□□□□□ -1.53
CCDC140Q96MF4 ATP10D-203ENST00000504445 2550 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
CCDC140Q96MF4 HYKK-206ENST00000569878 4097 ntAPPRIS P1 TSL 5 BASIC5.49□□□□□ -1.53
CCDC140Q96MF4 RDH11-203ENST00000553384 1926 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
CCDC140Q96MF4 AIG1-209ENST00000629020 3636 ntTSL 2 BASIC5.49□□□□□ -1.53
CCDC140Q96MF4 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC5.49□□□□□ -1.53
CCDC140Q96MF4 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC5.49□□□□□ -1.53
CCDC140Q96MF4 RNU6-1017P-201ENST00000363613 106 ntBASIC5.49□□□□□ -1.53
CCDC140Q96MF4 PSMD10-206ENST00000372296 878 ntTSL 5 BASIC5.49□□□□□ -1.53
CCDC140Q96MF4 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC5.49□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 78.6 ms