Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 AL513533.1-201ENST00000453728 415 ntBASIC1.53□□□□□ -2.16
SYNE1Q8NF91 SNORD125-201ENST00000459538 96 ntBASIC1.53□□□□□ -2.16
SYNE1Q8NF91 RPL7AP10-201ENST00000481016 791 ntBASIC1.53□□□□□ -2.16
SYNE1Q8NF91 MIR6133-201ENST00000617057 108 ntBASIC1.53□□□□□ -2.16
SYNE1Q8NF91 ZNF652P1-201ENST00000442420 1309 ntBASIC1.53□□□□□ -2.16
SYNE1Q8NF91 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC1.53□□□□□ -2.16
SYNE1Q8NF91 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC1.53□□□□□ -2.16
SYNE1Q8NF91 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC1.53□□□□□ -2.16
SYNE1Q8NF91 MAP3K2-201ENST00000344908 2135 ntAPPRIS P1 TSL 1 (best) BASIC1.53□□□□□ -2.16
SYNE1Q8NF91 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC1.53□□□□□ -2.16
SYNE1Q8NF91 FAM72A-201ENST00000341209 1774 ntTSL 1 (best) BASIC1.53□□□□□ -2.16
SYNE1Q8NF91 RASGRP1-209ENST00000559830 1910 ntTSL 1 (best) BASIC1.53□□□□□ -2.16
SYNE1Q8NF91 TEX41-207ENST00000445791 4635 ntTSL 1 (best) BASIC1.53□□□□□ -2.16
SYNE1Q8NF91 RNA5SP388-201ENST00000362584 119 ntBASIC1.53□□□□□ -2.16
SYNE1Q8NF91 U3.30-201ENST00000391308 210 ntBASIC1.53□□□□□ -2.16
SYNE1Q8NF91 PPIAP9-201ENST00000403866 498 ntBASIC1.53□□□□□ -2.16
SYNE1Q8NF91 AL158825.2-201ENST00000455336 670 ntTSL 5 BASIC1.53□□□□□ -2.16
SYNE1Q8NF91 HAX1-208ENST00000483970 1151 ntTSL 2 BASIC1.53□□□□□ -2.16
SYNE1Q8NF91 AC011453.2-201ENST00000603737 729 ntBASIC1.53□□□□□ -2.16
SYNE1Q8NF91 AC063952.1-203ENST00000634410 658 ntBASIC1.53□□□□□ -2.16
SYNE1Q8NF91 ZFAND6-213ENST00000559835 1446 ntAPPRIS P1 TSL 1 (best) BASIC1.53□□□□□ -2.16
SYNE1Q8NF91 AC010928.1-201ENST00000592477 1447 ntBASIC1.53□□□□□ -2.16
SYNE1Q8NF91 LRP2-201ENST00000263816 15808 ntAPPRIS P1 TSL 1 (best) BASIC1.53□□□□□ -2.16
SYNE1Q8NF91 RYR3-202ENST00000415757 15557 ntAPPRIS ALT2 TSL 2 BASIC1.53□□□□□ -2.16
SYNE1Q8NF91 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC1.53□□□□□ -2.16
SYNE1Q8NF91 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC1.53□□□□□ -2.16
SYNE1Q8NF91 AC025031.4-201ENST00000621248 3271 ntBASIC1.53□□□□□ -2.16
SYNE1Q8NF91 OR10A5-201ENST00000299454 1054 ntAPPRIS P1 BASIC1.53□□□□□ -2.16
SYNE1Q8NF91 AC093155.3-201ENST00000370548 2013 ntAPPRIS P1 TSL 2 BASIC1.53□□□□□ -2.16
SYNE1Q8NF91 EI24P4-201ENST00000423683 1078 ntBASIC1.53□□□□□ -2.16
SYNE1Q8NF91 VAV3-AS1-201ENST00000438318 619 ntTSL 2 BASIC1.53□□□□□ -2.16
SYNE1Q8NF91 RPS29P10-201ENST00000439197 166 ntBASIC1.53□□□□□ -2.16
SYNE1Q8NF91 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC1.53□□□□□ -2.16
SYNE1Q8NF91 AC008147.3-201ENST00000548666 354 ntBASIC1.53□□□□□ -2.16
SYNE1Q8NF91 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC1.53□□□□□ -2.16
SYNE1Q8NF91 MIR7641-1-201ENST00000627518 61 ntBASIC1.53□□□□□ -2.16
SYNE1Q8NF91 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC1.53□□□□□ -2.16
SYNE1Q8NF91 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC1.53□□□□□ -2.16
SYNE1Q8NF91 MELK-210ENST00000543751 2400 ntTSL 1 (best) BASIC1.53□□□□□ -2.16
SYNE1Q8NF91 PHTF2-207ENST00000424760 1977 ntTSL 2 BASIC1.53□□□□□ -2.16
SYNE1Q8NF91 AC139713.2-214ENST00000642059 1811 ntBASIC1.53□□□□□ -2.16
SYNE1Q8NF91 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC1.53□□□□□ -2.16
SYNE1Q8NF91 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC1.53□□□□□ -2.16
SYNE1Q8NF91 DMXL2-202ENST00000449909 7465 ntAPPRIS ALT2 TSL 1 (best) BASIC1.53□□□□□ -2.16
SYNE1Q8NF91 GAPT-202ENST00000396776 3016 ntAPPRIS P1 TSL 2 BASIC1.53□□□□□ -2.16
SYNE1Q8NF91 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC1.53□□□□□ -2.16
SYNE1Q8NF91 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC1.53□□□□□ -2.16
SYNE1Q8NF91 NCK1-204ENST00000469404 2403 ntTSL 2 BASIC1.53□□□□□ -2.16
SYNE1Q8NF91 OR5L2-201ENST00000378397 936 ntAPPRIS P1 BASIC1.53□□□□□ -2.16
SYNE1Q8NF91 RPL5P2-201ENST00000429598 854 ntBASIC1.53□□□□□ -2.16
SYNE1Q8NF91 RPL19P16-201ENST00000433839 588 ntBASIC1.53□□□□□ -2.16
SYNE1Q8NF91 AC090424.1-201ENST00000535243 736 ntBASIC1.53□□□□□ -2.16
SYNE1Q8NF91 AC234771.5-201ENST00000600161 514 ntBASIC1.53□□□□□ -2.16
SYNE1Q8NF91 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC1.53□□□□□ -2.16
SYNE1Q8NF91 PTPRT-209ENST00000612229 11285 ntTSL 5 BASIC1.53□□□□□ -2.16
SYNE1Q8NF91 LINC01847-201ENST00000522627 5607 ntTSL 1 (best) BASIC1.53□□□□□ -2.16
SYNE1Q8NF91 DIAPH3-208ENST00000498416 2249 ntTSL 1 (best) BASIC1.53□□□□□ -2.16
SYNE1Q8NF91 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC1.53□□□□□ -2.16
SYNE1Q8NF91 CPEB4-202ENST00000334035 6705 ntTSL 1 (best) BASIC1.53□□□□□ -2.16
SYNE1Q8NF91 AC006210.2-201ENST00000367074 1545 ntBASIC1.53□□□□□ -2.16
SYNE1Q8NF91 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC1.53□□□□□ -2.16
SYNE1Q8NF91 PPP1R2P3-201ENST00000522232 1991 ntAPPRIS P1 BASIC1.53□□□□□ -2.16
SYNE1Q8NF91 LRRK2-201ENST00000298910 9158 ntAPPRIS P1 TSL 1 (best) BASIC1.53□□□□□ -2.16
SYNE1Q8NF91 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC1.53□□□□□ -2.16
SYNE1Q8NF91 RPS4XP9-201ENST00000405151 780 ntBASIC1.53□□□□□ -2.16
SYNE1Q8NF91 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC1.53□□□□□ -2.16
SYNE1Q8NF91 LINC01881-201ENST00000416103 412 ntBASIC1.53□□□□□ -2.16
SYNE1Q8NF91 AL158154.1-201ENST00000427387 465 ntTSL 3 BASIC1.53□□□□□ -2.16
SYNE1Q8NF91 AC096543.1-201ENST00000455038 823 ntTSL 3 BASIC1.53□□□□□ -2.16
SYNE1Q8NF91 RN7SL41P-201ENST00000476144 297 ntBASIC1.53□□□□□ -2.16
SYNE1Q8NF91 AC020890.1-201ENST00000491837 504 ntBASIC1.53□□□□□ -2.16
SYNE1Q8NF91 EIF4E-204ENST00000504432 1132 ntTSL 5 BASIC1.53□□□□□ -2.16
SYNE1Q8NF91 AC087855.1-201ENST00000518178 430 ntTSL 3 BASIC1.53□□□□□ -2.16
SYNE1Q8NF91 ATXN3-215ENST00000532032 1191 ntTSL 1 (best) BASIC1.53□□□□□ -2.16
SYNE1Q8NF91 OR7E128P-201ENST00000532736 1024 ntBASIC1.53□□□□□ -2.16
SYNE1Q8NF91 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC1.53□□□□□ -2.16
SYNE1Q8NF91 H3F3BP2-201ENST00000583907 357 ntBASIC1.53□□□□□ -2.16
SYNE1Q8NF91 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC1.53□□□□□ -2.16
SYNE1Q8NF91 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC1.53□□□□□ -2.16
SYNE1Q8NF91 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC1.53□□□□□ -2.16
SYNE1Q8NF91 DAZ1-206ENST00000620725 1891 ntTSL 5 BASIC1.53□□□□□ -2.16
SYNE1Q8NF91 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC1.53□□□□□ -2.16
SYNE1Q8NF91 ZNF334-203ENST00000593880 2635 ntTSL 1 (best) BASIC1.53□□□□□ -2.16
SYNE1Q8NF91 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC1.53□□□□□ -2.16
SYNE1Q8NF91 CLEC2B-201ENST00000228438 1700 ntAPPRIS P1 TSL 1 (best) BASIC1.53□□□□□ -2.16
SYNE1Q8NF91 RN7SKP145-201ENST00000363291 303 ntBASIC1.53□□□□□ -2.16
SYNE1Q8NF91 AL122010.1-201ENST00000429293 720 ntTSL 2 BASIC1.53□□□□□ -2.16
SYNE1Q8NF91 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC1.53□□□□□ -2.16
SYNE1Q8NF91 AURKAPS2-201ENST00000454983 333 ntBASIC1.53□□□□□ -2.16
SYNE1Q8NF91 GIMAP2-202ENST00000474605 309 ntTSL 3 BASIC1.53□□□□□ -2.16
SYNE1Q8NF91 AC000372.1-201ENST00000488818 646 ntTSL 2 BASIC1.53□□□□□ -2.16
SYNE1Q8NF91 HMGB1P40-201ENST00000525121 540 ntBASIC1.53□□□□□ -2.16
SYNE1Q8NF91 RN7SL690P-201ENST00000582087 240 ntBASIC1.53□□□□□ -2.16
SYNE1Q8NF91 RPL27-207ENST00000590864 569 ntTSL 2 BASIC1.53□□□□□ -2.16
SYNE1Q8NF91 AC090948.1-201ENST00000607464 549 ntBASIC1.53□□□□□ -2.16
SYNE1Q8NF91 AC244107.2-201ENST00000611773 76 ntBASIC1.53□□□□□ -2.16
SYNE1Q8NF91 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC1.53□□□□□ -2.16
SYNE1Q8NF91 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC1.53□□□□□ -2.16
SYNE1Q8NF91 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC1.53□□□□□ -2.16
SYNE1Q8NF91 CPEB2-AS1-202ENST00000501916 1806 ntTSL 2 BASIC1.53□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 75.1 ms