Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 Z99916.1-201ENST00000454253 482 ntTSL 3 BASIC4.73□□□□□ -1.65
SDC1P18827 AL389915.2-201ENST00000454576 441 ntBASIC4.73□□□□□ -1.65
SDC1P18827 RN7SL517P-201ENST00000462240 305 ntBASIC4.73□□□□□ -1.65
SDC1P18827 AL035454.1-201ENST00000470758 433 ntTSL 3 BASIC4.73□□□□□ -1.65
SDC1P18827 AC097484.1-201ENST00000471148 389 ntBASIC4.73□□□□□ -1.65
SDC1P18827 COPS8P2-201ENST00000473228 627 ntBASIC4.73□□□□□ -1.65
SDC1P18827 AC090686.1-201ENST00000481577 749 ntBASIC4.73□□□□□ -1.65
SDC1P18827 AC091544.1-201ENST00000484702 348 ntBASIC4.73□□□□□ -1.65
SDC1P18827 AC097515.1-202ENST00000511818 371 ntTSL 3 BASIC4.73□□□□□ -1.65
SDC1P18827 RN7SKP260-201ENST00000516907 149 ntBASIC4.73□□□□□ -1.65
SDC1P18827 AC016885.1-201ENST00000517796 532 ntTSL 4 BASIC4.73□□□□□ -1.65
SDC1P18827 AC026688.1-201ENST00000520639 1168 ntBASIC4.73□□□□□ -1.65
SDC1P18827 RSF1-IT2-201ENST00000529656 566 ntTSL 5 BASIC4.73□□□□□ -1.65
SDC1P18827 LINC01493-201ENST00000530102 460 ntTSL 5 BASIC4.73□□□□□ -1.65
SDC1P18827 HNF1A-AS1-203ENST00000537361 659 ntTSL 3 BASIC4.73□□□□□ -1.65
SDC1P18827 LINC02451-202ENST00000548764 579 ntTSL 4 BASIC4.73□□□□□ -1.65
SDC1P18827 AL121839.1-201ENST00000556233 1185 ntBASIC4.73□□□□□ -1.65
SDC1P18827 EIF1P5-201ENST00000585002 234 ntBASIC4.73□□□□□ -1.65
SDC1P18827 AL133406.3-201ENST00000606817 541 ntBASIC4.73□□□□□ -1.65
SDC1P18827 AC020658.4-201ENST00000613987 684 ntBASIC4.73□□□□□ -1.65
SDC1P18827 AL049794.2-201ENST00000616301 365 ntBASIC4.73□□□□□ -1.65
SDC1P18827 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC4.73□□□□□ -1.65
SDC1P18827 IRAK1BP1-204ENST00000607739 1387 ntTSL 2 BASIC4.73□□□□□ -1.65
SDC1P18827 AL731566.1-201ENST00000620490 1937 ntBASIC4.73□□□□□ -1.65
SDC1P18827 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC4.73□□□□□ -1.65
SDC1P18827 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
SDC1P18827 ECM1P2-201ENST00000503354 1577 ntBASIC4.73□□□□□ -1.65
SDC1P18827 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
SDC1P18827 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC4.73□□□□□ -1.65
SDC1P18827 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC4.73□□□□□ -1.65
SDC1P18827 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC4.72□□□□□ -1.65
SDC1P18827 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC4.72□□□□□ -1.65
SDC1P18827 CDH18-210ENST00000511273 2318 ntTSL 5 BASIC4.72□□□□□ -1.65
SDC1P18827 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC4.72□□□□□ -1.65
SDC1P18827 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC4.72□□□□□ -1.65
SDC1P18827 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC4.72□□□□□ -1.65
SDC1P18827 FABP4-201ENST00000256104 941 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SDC1P18827 SPATA4-201ENST00000280191 1169 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SDC1P18827 AMELX-202ENST00000380712 835 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
SDC1P18827 AMELX-203ENST00000380714 793 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SDC1P18827 IL6ST-204ENST00000381293 612 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
SDC1P18827 KLRC3-202ENST00000396439 1028 ntAPPRIS ALT2 TSL 5 BASIC4.72□□□□□ -1.65
SDC1P18827 RPL36AP10-201ENST00000421785 322 ntBASIC4.72□□□□□ -1.65
SDC1P18827 LINC02257-202ENST00000433576 720 ntTSL 5 BASIC4.72□□□□□ -1.65
SDC1P18827 RSL24D1P2-201ENST00000445584 366 ntBASIC4.72□□□□□ -1.65
SDC1P18827 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC4.72□□□□□ -1.65
SDC1P18827 AC004994.1-201ENST00000447057 313 ntTSL 3 BASIC4.72□□□□□ -1.65
SDC1P18827 RHEBP2-201ENST00000450289 600 ntBASIC4.72□□□□□ -1.65
SDC1P18827 C1DP3-201ENST00000455013 423 ntBASIC4.72□□□□□ -1.65
SDC1P18827 IQCJ-SCHIP1-AS1-201ENST00000460574 508 ntTSL 3 BASIC4.72□□□□□ -1.65
SDC1P18827 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC4.72□□□□□ -1.65
SDC1P18827 CEP170-216ENST00000490813 1070 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
SDC1P18827 RN7SL101P-201ENST00000496350 279 ntBASIC4.72□□□□□ -1.65
SDC1P18827 AC104071.1-201ENST00000505636 602 ntTSL 3 BASIC4.72□□□□□ -1.65
SDC1P18827 AC139718.2-201ENST00000506068 481 ntTSL 3 BASIC4.72□□□□□ -1.65
SDC1P18827 AC115622.1-201ENST00000509628 587 ntTSL 3 BASIC4.72□□□□□ -1.65
SDC1P18827 AC012055.1-201ENST00000511346 1144 ntTSL 3 BASIC4.72□□□□□ -1.65
SDC1P18827 ATP5LP3-201ENST00000514223 304 ntBASIC4.72□□□□□ -1.65
SDC1P18827 SNORA48.9-201ENST00000516419 162 ntBASIC4.72□□□□□ -1.65
SDC1P18827 RNA5SP43-201ENST00000516559 110 ntBASIC4.72□□□□□ -1.65
SDC1P18827 AC018682.2-201ENST00000517716 399 ntTSL 5 BASIC4.72□□□□□ -1.65
SDC1P18827 IGHVII-44-2-201ENST00000517728 250 ntBASIC4.72□□□□□ -1.65
SDC1P18827 IGLVIV-64-201ENST00000518581 301 ntBASIC4.72□□□□□ -1.65
SDC1P18827 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC4.72□□□□□ -1.65
SDC1P18827 AC005000.1-201ENST00000536192 288 ntBASIC4.72□□□□□ -1.65
SDC1P18827 AC068775.2-201ENST00000539033 998 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SDC1P18827 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC4.72□□□□□ -1.65
SDC1P18827 NMNAT1P1-201ENST00000554095 876 ntBASIC4.72□□□□□ -1.65
SDC1P18827 SETP1-201ENST00000556014 845 ntBASIC4.72□□□□□ -1.65
SDC1P18827 AC107926.1-201ENST00000581673 621 ntTSL 3 BASIC4.72□□□□□ -1.65
SDC1P18827 MIR3936-201ENST00000584304 110 ntBASIC4.72□□□□□ -1.65
SDC1P18827 AC006504.5-201ENST00000588122 655 ntTSL 5 BASIC4.72□□□□□ -1.65
SDC1P18827 Z98949.1-211ENST00000596813 773 ntTSL 5 BASIC4.72□□□□□ -1.65
SDC1P18827 AC005377.1-201ENST00000605126 456 ntBASIC4.72□□□□□ -1.65
SDC1P18827 AL627230.1-201ENST00000613077 211 ntBASIC4.72□□□□□ -1.65
SDC1P18827 Metazoa_SRP.170-201ENST00000616060 254 ntBASIC4.72□□□□□ -1.65
SDC1P18827 AL591926.8-201ENST00000616876 211 ntBASIC4.72□□□□□ -1.65
SDC1P18827 DUXB-201ENST00000633875 1079 ntAPPRIS P1 TSL 3 BASIC4.72□□□□□ -1.65
SDC1P18827 NXF4-202ENST00000416098 1465 ntBASIC4.72□□□□□ -1.65
SDC1P18827 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
SDC1P18827 FAM184A-204ENST00000368475 3392 ntTSL 2 BASIC4.72□□□□□ -1.65
SDC1P18827 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SDC1P18827 TET2-203ENST00000380013 9679 ntAPPRIS P2 TSL 5 BASIC4.72□□□□□ -1.65
SDC1P18827 TM4SF1-202ENST00000472441 3115 ntTSL 2 BASIC4.72□□□□□ -1.65
SDC1P18827 ECM2-202ENST00000375540 1606 ntTSL 2 BASIC4.72□□□□□ -1.65
SDC1P18827 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC4.71□□□□□ -1.65
SDC1P18827 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.65
SDC1P18827 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC4.71□□□□□ -1.66
SDC1P18827 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
SDC1P18827 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.66
SDC1P18827 IL1RAPL1-202ENST00000378993 3667 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
SDC1P18827 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC4.71□□□□□ -1.66
SDC1P18827 SLC35F5-213ENST00000638402 1554 ntTSL 5 BASIC4.71□□□□□ -1.66
SDC1P18827 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC4.71□□□□□ -1.66
SDC1P18827 SNURFL-201ENST00000309296 343 ntBASIC4.71□□□□□ -1.66
SDC1P18827 AADAT-202ENST00000353187 2101 ntAPPRIS P3 TSL 2 BASIC4.71□□□□□ -1.66
SDC1P18827 RNU6-386P-201ENST00000362650 107 ntBASIC4.71□□□□□ -1.66
SDC1P18827 HEATR1-201ENST00000366579 793 ntTSL 2 BASIC4.71□□□□□ -1.66
SDC1P18827 AL607077.1-201ENST00000401718 499 ntBASIC4.71□□□□□ -1.66
SDC1P18827 AL078599.1-201ENST00000402075 293 ntBASIC4.71□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 76.7 ms