Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 RNU6-538P-201ENST00000622329 107 ntBASIC4.85□□□□□ -1.63
CLDN9O95484 RUVBL2-214ENST00000640699 153 ntTSL 5 BASIC4.85□□□□□ -1.63
CLDN9O95484 AC068446.1-201ENST00000556425 1549 ntBASIC4.85□□□□□ -1.63
CLDN9O95484 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC4.85□□□□□ -1.63
CLDN9O95484 CDC16-202ENST00000252458 1991 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
CLDN9O95484 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC4.85□□□□□ -1.63
CLDN9O95484 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC4.85□□□□□ -1.63
CLDN9O95484 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC4.85□□□□□ -1.63
CLDN9O95484 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC4.85□□□□□ -1.63
CLDN9O95484 TAX1BP1-203ENST00000409980 2629 ntAPPRIS ALT2 TSL 5 BASIC4.85□□□□□ -1.63
CLDN9O95484 AC118758.3-201ENST00000624628 24137 ntTSL 5 BASIC4.85□□□□□ -1.63
CLDN9O95484 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
CLDN9O95484 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
CLDN9O95484 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC4.85□□□□□ -1.63
CLDN9O95484 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
CLDN9O95484 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
CLDN9O95484 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC4.84□□□□□ -1.63
CLDN9O95484 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC4.84□□□□□ -1.63
CLDN9O95484 SLC1A3-216ENST00000613445 4030 ntTSL 5 BASIC4.84□□□□□ -1.63
CLDN9O95484 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC4.84□□□□□ -1.63
CLDN9O95484 HTR1F-201ENST00000319595 3140 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
CLDN9O95484 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
CLDN9O95484 FAP-203ENST00000443424 2598 ntTSL 2 BASIC4.84□□□□□ -1.63
CLDN9O95484 CFI-202ENST00000394635 2053 ntAPPRIS ALT2 TSL 2 BASIC4.84□□□□□ -1.63
CLDN9O95484 GBA3-205ENST00000511446 2018 ntTSL 2 BASIC4.84□□□□□ -1.63
CLDN9O95484 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC4.84□□□□□ -1.63
CLDN9O95484 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC4.84□□□□□ -1.63
CLDN9O95484 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
CLDN9O95484 ZNF733P-202ENST00000444809 1573 ntBASIC4.84□□□□□ -1.63
CLDN9O95484 MRRF-208ENST00000394315 1501 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
CLDN9O95484 AL162425.1-201ENST00000423637 1525 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
CLDN9O95484 ACTR3BP5-201ENST00000448440 1479 ntBASIC4.84□□□□□ -1.63
CLDN9O95484 AC105411.1-201ENST00000568776 1470 ntTSL 4 BASIC4.84□□□□□ -1.63
CLDN9O95484 ZC2HC1B-201ENST00000237275 1002 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
CLDN9O95484 OR2AE1-201ENST00000316368 1071 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
CLDN9O95484 AMELX-201ENST00000348912 737 ntTSL 5 BASIC4.84□□□□□ -1.63
CLDN9O95484 SNORA73.1-201ENST00000363107 205 ntBASIC4.84□□□□□ -1.63
CLDN9O95484 OR2J2-202ENST00000377167 1272 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
CLDN9O95484 CCL7-203ENST00000394630 687 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
CLDN9O95484 MIR1178-201ENST00000408396 91 ntBASIC4.84□□□□□ -1.63
CLDN9O95484 ATP6V1G1P7-201ENST00000415853 349 ntBASIC4.84□□□□□ -1.63
CLDN9O95484 BX510359.3-201ENST00000422168 306 ntBASIC4.84□□□□□ -1.63
CLDN9O95484 DDX39BP1-205ENST00000422507 192 ntBASIC4.84□□□□□ -1.63
CLDN9O95484 NANOGP4-201ENST00000427230 913 ntBASIC4.84□□□□□ -1.63
CLDN9O95484 GNGT1-204ENST00000430875 628 ntTSL 2 BASIC4.84□□□□□ -1.63
CLDN9O95484 UBE2V2P1-201ENST00000434717 398 ntBASIC4.84□□□□□ -1.63
CLDN9O95484 FSIP2-AS1-202ENST00000436557 689 ntTSL 3 BASIC4.84□□□□□ -1.63
CLDN9O95484 AC092647.2-201ENST00000452998 253 ntBASIC4.84□□□□□ -1.63
CLDN9O95484 AC069304.1-201ENST00000491593 704 ntBASIC4.84□□□□□ -1.63
CLDN9O95484 MTCO3P42-201ENST00000509488 518 ntBASIC4.84□□□□□ -1.63
CLDN9O95484 MTCO3P39-201ENST00000514812 518 ntBASIC4.84□□□□□ -1.63
CLDN9O95484 RAD21-204ENST00000518055 896 ntTSL 2 BASIC4.84□□□□□ -1.63
CLDN9O95484 MS4A6A-210ENST00000529054 1160 ntTSL 5 BASIC4.84□□□□□ -1.63
CLDN9O95484 AC108471.2-203ENST00000532680 517 ntTSL 5 BASIC4.84□□□□□ -1.63
CLDN9O95484 MIR670HG-201ENST00000533531 897 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
CLDN9O95484 CACNA1C-IT1-201ENST00000542984 687 ntTSL 3 BASIC4.84□□□□□ -1.63
CLDN9O95484 BNIP3P1-201ENST00000547295 580 ntBASIC4.84□□□□□ -1.63
CLDN9O95484 AC004825.1-201ENST00000555068 586 ntBASIC4.84□□□□□ -1.63
CLDN9O95484 AC105339.2-201ENST00000558342 1091 ntTSL 3 BASIC4.84□□□□□ -1.63
CLDN9O95484 AC015914.2-201ENST00000618167 288 ntBASIC4.84□□□□□ -1.63
CLDN9O95484 PHACTR2P1-202ENST00000636592 773 ntTSL 5 BASIC4.84□□□□□ -1.63
CLDN9O95484 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC4.84□□□□□ -1.63
CLDN9O95484 BBX-204ENST00000406780 3674 ntAPPRIS P3 TSL 5 BASIC4.84□□□□□ -1.63
CLDN9O95484 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
CLDN9O95484 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
CLDN9O95484 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
CLDN9O95484 ATF7IP-214ENST00000540793 4142 ntAPPRIS P3 TSL 1 (best) BASIC4.84□□□□□ -1.64
CLDN9O95484 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC4.84□□□□□ -1.64
CLDN9O95484 CSPP1-201ENST00000262210 4367 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
CLDN9O95484 AC000374.1-201ENST00000434698 1745 ntBASIC4.83□□□□□ -1.64
CLDN9O95484 TET2-203ENST00000380013 9679 ntAPPRIS P2 TSL 5 BASIC4.83□□□□□ -1.64
CLDN9O95484 SESN1-201ENST00000302071 2718 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
CLDN9O95484 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
CLDN9O95484 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
CLDN9O95484 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
CLDN9O95484 SUPT3H-203ENST00000371460 2389 ntAPPRIS P4 TSL 1 (best) BASIC4.83□□□□□ -1.64
CLDN9O95484 THAP12P5-201ENST00000405864 2275 ntBASIC4.83□□□□□ -1.64
CLDN9O95484 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
CLDN9O95484 AL353740.1-201ENST00000366253 575 ntTSL 2 BASIC4.83□□□□□ -1.64
CLDN9O95484 HSPB11-202ENST00000371376 765 ntTSL 3 BASIC4.83□□□□□ -1.64
CLDN9O95484 DEC1-201ENST00000374016 1251 ntAPPRIS P2 TSL 1 (best) BASIC4.83□□□□□ -1.64
CLDN9O95484 OR13C3-201ENST00000374781 1108 ntBASIC4.83□□□□□ -1.64
CLDN9O95484 SNORA70.10-201ENST00000384515 134 ntBASIC4.83□□□□□ -1.64
CLDN9O95484 SNORA66-201ENST00000384792 133 ntBASIC4.83□□□□□ -1.64
CLDN9O95484 RNU6ATAC21P-201ENST00000408656 126 ntBASIC4.83□□□□□ -1.64
CLDN9O95484 AF015720.1-201ENST00000412240 349 ntTSL 3 BASIC4.83□□□□□ -1.64
CLDN9O95484 FLJ27354-201ENST00000415584 788 ntTSL 2 BASIC4.83□□□□□ -1.64
CLDN9O95484 LINC00189-203ENST00000447125 783 ntTSL 3 BASIC4.83□□□□□ -1.64
CLDN9O95484 AC068492.1-201ENST00000448672 469 ntTSL 3 BASIC4.83□□□□□ -1.64
CLDN9O95484 FAR2P1-206ENST00000449736 709 ntBASIC4.83□□□□□ -1.64
CLDN9O95484 IGHV5-78-201ENST00000450948 295 ntBASIC4.83□□□□□ -1.64
CLDN9O95484 RN7SL172P-201ENST00000460535 303 ntBASIC4.83□□□□□ -1.64
CLDN9O95484 RPS17P2-201ENST00000461663 408 ntBASIC4.83□□□□□ -1.64
CLDN9O95484 RN7SL799P-201ENST00000475891 298 ntBASIC4.83□□□□□ -1.64
CLDN9O95484 NADK2-AS1-201ENST00000501794 720 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
CLDN9O95484 HMGB3P16-201ENST00000508037 287 ntBASIC4.83□□□□□ -1.64
CLDN9O95484 IGHVII-44-2-201ENST00000517728 250 ntBASIC4.83□□□□□ -1.64
CLDN9O95484 AC015522.1-201ENST00000523678 640 ntTSL 3 BASIC4.83□□□□□ -1.64
CLDN9O95484 UQCRB-209ENST00000523920 695 ntTSL 5 BASIC4.83□□□□□ -1.64
CLDN9O95484 AP000859.1-201ENST00000525536 307 ntBASIC4.83□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 85.9 ms