Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 KIN-201ENST00000379562 6348 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
USP39Q53GS9 ENSA-214ENST00000513281 1369 ntTSL 2 BASIC6.03□□□□□ -1.44
USP39Q53GS9 AP001541.1-201ENST00000623322 1904 ntBASIC6.03□□□□□ -1.44
USP39Q53GS9 LARP4-203ENST00000398473 6427 ntAPPRIS P3 TSL 1 (best) BASIC6.03□□□□□ -1.44
USP39Q53GS9 SNX18P3-202ENST00000565670 1750 ntBASIC6.03□□□□□ -1.44
USP39Q53GS9 ZNF484-201ENST00000332591 2836 ntTSL 2 BASIC6.03□□□□□ -1.44
USP39Q53GS9 MTX3-204ENST00000617335 6155 ntTSL 2 BASIC6.03□□□□□ -1.44
USP39Q53GS9 AP002478.1-201ENST00000577848 1455 ntTSL 1 (best) BASIC6.02□□□□□ -1.44
USP39Q53GS9 PLEKHA1-201ENST00000368988 3872 ntTSL 5 BASIC6.02□□□□□ -1.45
USP39Q53GS9 LINC00309-201ENST00000431020 3307 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
USP39Q53GS9 PDE4B-203ENST00000371045 3982 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
USP39Q53GS9 THEMIS-206ENST00000630369 2786 ntAPPRIS ALT2 TSL 1 (best) BASIC6.02□□□□□ -1.45
USP39Q53GS9 NCOR1-202ENST00000395848 3106 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
USP39Q53GS9 AC087667.1-201ENST00000500180 1422 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
USP39Q53GS9 WASHC4-202ENST00000332180 5812 ntAPPRIS P3 TSL 1 (best) BASIC6.02□□□□□ -1.45
USP39Q53GS9 AL591135.1-201ENST00000401578 5914 ntBASIC6.02□□□□□ -1.45
USP39Q53GS9 AL731532.1-201ENST00000623972 4236 ntBASIC6.02□□□□□ -1.45
USP39Q53GS9 ZNF721-201ENST00000338977 4492 ntTSL 2 BASIC6.02□□□□□ -1.45
USP39Q53GS9 OR4K5-201ENST00000315915 1078 ntAPPRIS P1 BASIC6.02□□□□□ -1.45
USP39Q53GS9 SELENOWP1-201ENST00000322792 252 ntBASIC6.02□□□□□ -1.45
USP39Q53GS9 OR9K1P-201ENST00000326513 941 ntBASIC6.02□□□□□ -1.45
USP39Q53GS9 IFNA10-201ENST00000357374 963 ntAPPRIS P1 BASIC6.02□□□□□ -1.45
USP39Q53GS9 SNORA74A-201ENST00000364089 198 ntBASIC6.02□□□□□ -1.45
USP39Q53GS9 DEFB133-201ENST00000398721 186 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
USP39Q53GS9 NUDT19P3-201ENST00000404698 555 ntBASIC6.02□□□□□ -1.45
USP39Q53GS9 HNMT-204ENST00000410115 1150 ntAPPRIS P1 TSL 5 BASIC6.02□□□□□ -1.45
USP39Q53GS9 AL445213.1-201ENST00000412589 747 ntBASIC6.02□□□□□ -1.45
USP39Q53GS9 AF274854.1-201ENST00000413236 615 ntBASIC6.02□□□□□ -1.45
USP39Q53GS9 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC6.02□□□□□ -1.45
USP39Q53GS9 RPL23AP18-201ENST00000416139 468 ntBASIC6.02□□□□□ -1.45
USP39Q53GS9 DPP10-AS3-201ENST00000417844 665 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
USP39Q53GS9 AL449283.1-202ENST00000418249 604 ntBASIC6.02□□□□□ -1.45
USP39Q53GS9 PTP4A1P3-201ENST00000433661 420 ntBASIC6.02□□□□□ -1.45
USP39Q53GS9 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC6.02□□□□□ -1.45
USP39Q53GS9 H3F3BP1-201ENST00000440551 403 ntBASIC6.02□□□□□ -1.45
USP39Q53GS9 RPS27AP8-201ENST00000452665 445 ntBASIC6.02□□□□□ -1.45
USP39Q53GS9 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC6.02□□□□□ -1.45
USP39Q53GS9 PTGES3P5-201ENST00000455109 434 ntBASIC6.02□□□□□ -1.45
USP39Q53GS9 AC104849.1-201ENST00000462623 405 ntBASIC6.02□□□□□ -1.45
USP39Q53GS9 AC111000.2-201ENST00000507775 550 ntBASIC6.02□□□□□ -1.45
USP39Q53GS9 AC017091.1-202ENST00000510941 504 ntTSL 3 BASIC6.02□□□□□ -1.45
USP39Q53GS9 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC6.02□□□□□ -1.45
USP39Q53GS9 AC074087.1-201ENST00000512059 724 ntBASIC6.02□□□□□ -1.45
USP39Q53GS9 AC006296.1-201ENST00000514401 591 ntTSL 2 BASIC6.02□□□□□ -1.45
USP39Q53GS9 LINC02497-201ENST00000515292 507 ntTSL 3 BASIC6.02□□□□□ -1.45
USP39Q53GS9 RNU6-1129P-201ENST00000515964 104 ntBASIC6.02□□□□□ -1.45
USP39Q53GS9 AC012464.2-201ENST00000551257 779 ntTSL 5 BASIC6.02□□□□□ -1.45
USP39Q53GS9 AC027229.1-201ENST00000583887 253 ntBASIC6.02□□□□□ -1.45
USP39Q53GS9 AC020916.2-201ENST00000591242 360 ntBASIC6.02□□□□□ -1.45
USP39Q53GS9 MIMT1-201ENST00000597105 1050 ntBASIC6.02□□□□□ -1.45
USP39Q53GS9 UBA52-209ENST00000597451 514 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
USP39Q53GS9 AC097717.1-211ENST00000600604 687 ntTSL 5 BASIC6.02□□□□□ -1.45
USP39Q53GS9 AC073387.2-201ENST00000604797 784 ntBASIC6.02□□□□□ -1.45
USP39Q53GS9 AL021707.7-201ENST00000607991 416 ntBASIC6.02□□□□□ -1.45
USP39Q53GS9 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC6.02□□□□□ -1.45
USP39Q53GS9 AL008635.1-201ENST00000609073 385 ntTSL 3 BASIC6.02□□□□□ -1.45
USP39Q53GS9 AC079395.2-201ENST00000610982 737 ntBASIC6.02□□□□□ -1.45
USP39Q53GS9 U1.34-201ENST00000618578 162 ntBASIC6.02□□□□□ -1.45
USP39Q53GS9 AL137067.2-201ENST00000621202 131 ntBASIC6.02□□□□□ -1.45
USP39Q53GS9 MIR6719-201ENST00000622428 87 ntBASIC6.02□□□□□ -1.45
USP39Q53GS9 AC090897.3-201ENST00000636973 1157 ntBASIC6.02□□□□□ -1.45
USP39Q53GS9 BDNF-210ENST00000438929 4059 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
USP39Q53GS9 AC011503.2-201ENST00000594230 1500 ntBASIC6.02□□□□□ -1.45
USP39Q53GS9 NSUN3-201ENST00000314622 3289 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
USP39Q53GS9 HDAC1P2-201ENST00000453661 1398 ntBASIC6.02□□□□□ -1.45
USP39Q53GS9 ZNF26-202ENST00000534834 4853 ntAPPRIS ALT2 TSL 2 BASIC6.02□□□□□ -1.45
USP39Q53GS9 ZNF254-208ENST00000616028 3886 ntTSL 4 BASIC6.02□□□□□ -1.45
USP39Q53GS9 AC020633.1-201ENST00000468439 2247 ntBASIC6.02□□□□□ -1.45
USP39Q53GS9 CEACAMP10-201ENST00000489959 1721 ntTSL 2 BASIC6.02□□□□□ -1.45
USP39Q53GS9 CALN1-204ENST00000405452 8571 ntTSL 2 BASIC6.02□□□□□ -1.45
USP39Q53GS9 KIAA1328-201ENST00000280020 4853 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
USP39Q53GS9 FCGR1B-209ENST00000616817 1584 ntAPPRIS ALT2 TSL 5 BASIC6.01□□□□□ -1.45
USP39Q53GS9 SGO2-201ENST00000357799 4214 ntAPPRIS P2 TSL 1 (best) BASIC6.01□□□□□ -1.45
USP39Q53GS9 HSPA13-201ENST00000285667 3986 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
USP39Q53GS9 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
USP39Q53GS9 ZNF177-202ENST00000589262 1920 ntAPPRIS ALT2 TSL 2 BASIC6.01□□□□□ -1.45
USP39Q53GS9 SLC24A5-204ENST00000482911 2984 ntTSL 2 BASIC6.01□□□□□ -1.45
USP39Q53GS9 IMMTP1-201ENST00000435590 2219 ntBASIC6.01□□□□□ -1.45
USP39Q53GS9 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC6.01□□□□□ -1.45
USP39Q53GS9 CDK1-202ENST00000373809 1613 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
USP39Q53GS9 TAS2R16-201ENST00000249284 997 ntAPPRIS P1 BASIC6.01□□□□□ -1.45
USP39Q53GS9 LYPD6B-201ENST00000280115 1100 ntAPPRIS ALT2 TSL 5 BASIC6.01□□□□□ -1.45
USP39Q53GS9 TRBV23-1-201ENST00000390396 347 ntAPPRIS P1 BASIC6.01□□□□□ -1.45
USP39Q53GS9 AC007068.1-201ENST00000396690 844 ntBASIC6.01□□□□□ -1.45
USP39Q53GS9 AL138749.1-201ENST00000397864 791 ntTSL 5 BASIC6.01□□□□□ -1.45
USP39Q53GS9 POLR1D-202ENST00000399696 668 ntAPPRIS ALT1 TSL 5 BASIC6.01□□□□□ -1.45
USP39Q53GS9 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC6.01□□□□□ -1.45
USP39Q53GS9 UBE2V1P10-201ENST00000414685 269 ntBASIC6.01□□□□□ -1.45
USP39Q53GS9 LINC02246-202ENST00000418954 717 ntTSL 2 BASIC6.01□□□□□ -1.45
USP39Q53GS9 TAB2-AS1-201ENST00000424421 730 ntTSL 5 BASIC6.01□□□□□ -1.45
USP39Q53GS9 AC107057.1-201ENST00000425763 319 ntTSL 3 BASIC6.01□□□□□ -1.45
USP39Q53GS9 AC084290.1-201ENST00000434995 374 ntBASIC6.01□□□□□ -1.45
USP39Q53GS9 AC003001.1-201ENST00000443247 1135 ntTSL 5 BASIC6.01□□□□□ -1.45
USP39Q53GS9 AL512593.1-201ENST00000444758 779 ntBASIC6.01□□□□□ -1.45
USP39Q53GS9 LINC01828-201ENST00000445514 531 ntTSL 4 BASIC6.01□□□□□ -1.45
USP39Q53GS9 AC073909.1-201ENST00000447112 999 ntBASIC6.01□□□□□ -1.45
USP39Q53GS9 AL360091.1-201ENST00000447949 496 ntTSL 5 BASIC6.01□□□□□ -1.45
USP39Q53GS9 RPL7P55-201ENST00000450522 746 ntBASIC6.01□□□□□ -1.45
USP39Q53GS9 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC6.01□□□□□ -1.45
USP39Q53GS9 AC008080.2-201ENST00000455149 577 ntTSL 4 BASIC6.01□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 92 ms