Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 UNC5C-205ENST00000610318 9403 ntTSL 5 BASIC6.79□□□□□ -1.32
LIG3P49916 DMD-205ENST00000359836 7339 ntTSL 5 BASIC6.79□□□□□ -1.32
LIG3P49916 OR2J3-201ENST00000377169 1325 ntAPPRIS P1 BASIC6.79□□□□□ -1.32
LIG3P49916 LYVE1-201ENST00000256178 3273 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
LIG3P49916 AC012020.1-201ENST00000624541 1728 ntBASIC6.79□□□□□ -1.32
LIG3P49916 TTI1-203ENST00000449821 3791 ntAPPRIS P1 TSL 2 BASIC6.79□□□□□ -1.32
LIG3P49916 CCDC102B-210ENST00000584156 1554 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
LIG3P49916 DCN-218ENST00000551354 2924 ntTSL 3 BASIC6.79□□□□□ -1.32
LIG3P49916 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC6.79□□□□□ -1.32
LIG3P49916 SOS1-201ENST00000395038 4123 ntAPPRIS ALT2 TSL 5 BASIC6.79□□□□□ -1.32
LIG3P49916 MEPE-209ENST00000560249 2206 ntAPPRIS ALT2 TSL 1 (best) BASIC6.79□□□□□ -1.32
LIG3P49916 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC6.79□□□□□ -1.32
LIG3P49916 RNU6-98P-201ENST00000384173 107 ntBASIC6.79□□□□□ -1.32
LIG3P49916 UBBP1-201ENST00000392399 473 ntBASIC6.79□□□□□ -1.32
LIG3P49916 AC026310.1-201ENST00000396004 378 ntBASIC6.79□□□□□ -1.32
LIG3P49916 PPP1R7-203ENST00000401987 820 ntTSL 3 BASIC6.79□□□□□ -1.32
LIG3P49916 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC6.79□□□□□ -1.32
LIG3P49916 UBE2Q2P5Y-201ENST00000413867 207 ntBASIC6.79□□□□□ -1.32
LIG3P49916 AK4P4-201ENST00000419465 646 ntBASIC6.79□□□□□ -1.32
LIG3P49916 CDC42P6-201ENST00000421246 576 ntBASIC6.79□□□□□ -1.32
LIG3P49916 GAPDHP49-201ENST00000421421 961 ntBASIC6.79□□□□□ -1.32
LIG3P49916 AL390115.1-201ENST00000425271 423 ntTSL 5 BASIC6.79□□□□□ -1.32
LIG3P49916 OR4K3-201ENST00000425829 947 ntAPPRIS P1 BASIC6.79□□□□□ -1.32
LIG3P49916 UBE2Q2P4Y-201ENST00000433767 207 ntBASIC6.79□□□□□ -1.32
LIG3P49916 AC068888.2-201ENST00000435621 536 ntTSL 3 BASIC6.79□□□□□ -1.32
LIG3P49916 AL356121.1-201ENST00000442911 156 ntBASIC6.79□□□□□ -1.32
LIG3P49916 AL731568.1-201ENST00000445111 434 ntTSL 2 BASIC6.79□□□□□ -1.32
LIG3P49916 OSBPL10-AS1-206ENST00000447181 575 ntTSL 4 BASIC6.79□□□□□ -1.32
LIG3P49916 RPL31P44-201ENST00000447680 377 ntBASIC6.79□□□□□ -1.32
LIG3P49916 SNRPGP9-201ENST00000456025 225 ntBASIC6.79□□□□□ -1.32
LIG3P49916 AL157373.1-201ENST00000456036 276 ntTSL 3 BASIC6.79□□□□□ -1.32
LIG3P49916 AC104763.1-201ENST00000475274 360 ntBASIC6.79□□□□□ -1.32
LIG3P49916 RN7SL502P-201ENST00000481857 290 ntBASIC6.79□□□□□ -1.32
LIG3P49916 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
LIG3P49916 RPL7L1P4-201ENST00000513004 707 ntBASIC6.79□□□□□ -1.32
LIG3P49916 RNU6-416P-201ENST00000516265 103 ntBASIC6.79□□□□□ -1.32
LIG3P49916 RNU6-1225P-201ENST00000516336 65 ntBASIC6.79□□□□□ -1.32
LIG3P49916 RNU6-405P-201ENST00000516637 110 ntBASIC6.79□□□□□ -1.32
LIG3P49916 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC6.79□□□□□ -1.32
LIG3P49916 AC087664.1-201ENST00000521456 358 ntTSL 3 BASIC6.79□□□□□ -1.32
LIG3P49916 AL137224.1-201ENST00000527984 389 ntTSL 2 BASIC6.79□□□□□ -1.32
LIG3P49916 SNRPCP6-201ENST00000528310 210 ntBASIC6.79□□□□□ -1.32
LIG3P49916 AF235103.1-201ENST00000530223 439 ntTSL 3 BASIC6.79□□□□□ -1.32
LIG3P49916 AC020612.3-201ENST00000550644 570 ntTSL 2 BASIC6.79□□□□□ -1.32
LIG3P49916 GNG2-203ENST00000553432 577 ntTSL 4 BASIC6.79□□□□□ -1.32
LIG3P49916 LINC02188-201ENST00000562064 550 ntTSL 4 BASIC6.79□□□□□ -1.32
LIG3P49916 AC234778.2-201ENST00000566241 354 ntBASIC6.79□□□□□ -1.32
LIG3P49916 AC012414.6-201ENST00000568241 401 ntBASIC6.79□□□□□ -1.32
LIG3P49916 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC6.79□□□□□ -1.32
LIG3P49916 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC6.79□□□□□ -1.32
LIG3P49916 AC074237.1-201ENST00000577674 471 ntTSL 3 BASIC6.79□□□□□ -1.32
LIG3P49916 AC007923.1-201ENST00000577970 505 ntTSL 4 BASIC6.79□□□□□ -1.32
LIG3P49916 RN7SL66P-201ENST00000582099 264 ntBASIC6.79□□□□□ -1.32
LIG3P49916 MIR548Y-201ENST00000582739 110 ntBASIC6.79□□□□□ -1.32
LIG3P49916 AC006305.3-201ENST00000590589 454 ntTSL 2 BASIC6.79□□□□□ -1.32
LIG3P49916 AL390838.2-201ENST00000602394 274 ntBASIC6.79□□□□□ -1.32
LIG3P49916 AC112220.3-201ENST00000605502 502 ntBASIC6.79□□□□□ -1.32
LIG3P49916 NQO2-209ENST00000606474 470 ntTSL 3 BASIC6.79□□□□□ -1.32
LIG3P49916 LINC01320-206ENST00000607437 528 ntTSL 5 BASIC6.79□□□□□ -1.32
LIG3P49916 LINC00635-219ENST00000608506 482 ntTSL 5 BASIC6.79□□□□□ -1.32
LIG3P49916 MIR6885-201ENST00000612241 66 ntBASIC6.79□□□□□ -1.32
LIG3P49916 AC008498.1-201ENST00000613012 531 ntBASIC6.79□□□□□ -1.32
LIG3P49916 AC012676.3-201ENST00000614983 479 ntBASIC6.79□□□□□ -1.32
LIG3P49916 HTR1DP1-201ENST00000616500 888 ntBASIC6.79□□□□□ -1.32
LIG3P49916 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC6.79□□□□□ -1.32
LIG3P49916 TEX41-256ENST00000626411 368 ntTSL 5 BASIC6.79□□□□□ -1.32
LIG3P49916 AC099063.3-201ENST00000642066 185 ntBASIC6.79□□□□□ -1.32
LIG3P49916 MRRFP1-201ENST00000435941 1675 ntBASIC6.79□□□□□ -1.32
LIG3P49916 CLVS1-203ENST00000518592 2880 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
LIG3P49916 UEVLD-202ENST00000320750 1799 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
LIG3P49916 RNF217-201ENST00000359704 1784 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
LIG3P49916 TRMT10A-202ENST00000394876 1638 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
LIG3P49916 PLCB4-202ENST00000378473 5619 ntAPPRIS ALT1 TSL 1 (best) BASIC6.79□□□□□ -1.32
LIG3P49916 NRDC-213ENST00000539524 3417 ntAPPRIS ALT2 TSL 1 (best) BASIC6.79□□□□□ -1.32
LIG3P49916 SLC1A2-202ENST00000395750 11538 ntAPPRIS ALT1 TSL 1 (best) BASIC6.79□□□□□ -1.32
LIG3P49916 LINC01153-201ENST00000429809 2864 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
LIG3P49916 TRIM34-204ENST00000514226 2493 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
LIG3P49916 LYPD6B-202ENST00000409029 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC6.78□□□□□ -1.32
LIG3P49916 AC092958.1-201ENST00000467198 2569 ntTSL 2 BASIC6.78□□□□□ -1.32
LIG3P49916 GRPR-201ENST00000380289 1929 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
LIG3P49916 LINC01741-201ENST00000427173 1666 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
LIG3P49916 C5orf24-201ENST00000338051 4270 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
LIG3P49916 DNM1P47-202ENST00000561463 15043 ntTSL 5 BASIC6.78□□□□□ -1.32
LIG3P49916 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC6.78□□□□□ -1.32
LIG3P49916 CASP1-208ENST00000527979 1521 ntTSL 5 BASIC6.78□□□□□ -1.32
LIG3P49916 TESPA1-210ENST00000531122 1517 ntAPPRIS ALT2 TSL 2 BASIC6.78□□□□□ -1.32
LIG3P49916 BTLA-201ENST00000334529 3213 ntAPPRIS P3 TSL 1 (best) BASIC6.78□□□□□ -1.32
LIG3P49916 OR7D2-202ENST00000641288 3248 ntAPPRIS P1 BASIC6.78□□□□□ -1.32
LIG3P49916 OR13F1-201ENST00000334726 960 ntAPPRIS P1 BASIC6.78□□□□□ -1.32
LIG3P49916 PCYT1B-201ENST00000356768 1289 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
LIG3P49916 RNU1-5P-201ENST00000362684 144 ntBASIC6.78□□□□□ -1.32
LIG3P49916 SNORA4.1-201ENST00000364263 144 ntBASIC6.78□□□□□ -1.32
LIG3P49916 LCN1P2-201ENST00000372030 223 ntBASIC6.78□□□□□ -1.32
LIG3P49916 AL359922.1-201ENST00000404796 935 ntAPPRIS P1 TSL 5 BASIC6.78□□□□□ -1.32
LIG3P49916 RNA5SP155-201ENST00000411154 129 ntBASIC6.78□□□□□ -1.32
LIG3P49916 AL161449.1-201ENST00000414531 1199 ntBASIC6.78□□□□□ -1.32
LIG3P49916 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC6.78□□□□□ -1.32
LIG3P49916 AC099654.1-202ENST00000415836 564 ntTSL 4 BASIC6.78□□□□□ -1.32
LIG3P49916 AL162408.1-201ENST00000428853 433 ntTSL 5 BASIC6.78□□□□□ -1.32
LIG3P49916 MRPS10P2-201ENST00000431226 381 ntBASIC6.78□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 74.5 ms