Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AC099518.1-201ENST00000568032 841 ntTSL 3 BASIC6.83□□□□□ -1.32
MSX1P28360 ANP32BP1-202ENST00000568553 737 ntBASIC6.83□□□□□ -1.32
MSX1P28360 AC005668.1-201ENST00000571142 476 ntBASIC6.83□□□□□ -1.32
MSX1P28360 RPS7P1-201ENST00000571702 585 ntBASIC6.83□□□□□ -1.32
MSX1P28360 SCIMP-204ENST00000574297 569 ntAPPRIS ALT2 TSL 3 BASIC6.83□□□□□ -1.32
MSX1P28360 AC010327.4-201ENST00000585911 857 ntTSL 2 BASIC6.83□□□□□ -1.32
MSX1P28360 C10orf82-203ENST00000588184 852 ntAPPRIS ALT2 TSL 3 BASIC6.83□□□□□ -1.32
MSX1P28360 ZNF730-201ENST00000593635 464 ntTSL 3 BASIC6.83□□□□□ -1.32
MSX1P28360 AL133338.2-201ENST00000604292 736 ntBASIC6.83□□□□□ -1.32
MSX1P28360 AC010680.4-201ENST00000605334 543 ntBASIC6.83□□□□□ -1.32
MSX1P28360 U47924.1-201ENST00000606539 434 ntBASIC6.83□□□□□ -1.32
MSX1P28360 AC005392.3-201ENST00000607109 459 ntTSL 2 BASIC6.83□□□□□ -1.32
MSX1P28360 AC135050.6-202ENST00000613584 392 ntBASIC6.83□□□□□ -1.32
MSX1P28360 PACRG-211ENST00000621363 360 ntTSL 5 BASIC6.83□□□□□ -1.32
MSX1P28360 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC6.83□□□□□ -1.32
MSX1P28360 AL596275.2-203ENST00000641951 371 ntBASIC6.83□□□□□ -1.32
MSX1P28360 TEX11-204ENST00000395889 3133 ntAPPRIS P3 TSL 2 BASIC6.83□□□□□ -1.32
MSX1P28360 CPB2-201ENST00000181383 1717 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
MSX1P28360 DNAH17-202ENST00000585328 13708 ntAPPRIS ALT2 TSL 5 BASIC6.83□□□□□ -1.32
MSX1P28360 TMC5-205ENST00000542583 4872 ntAPPRIS ALT2 TSL 2 BASIC6.83□□□□□ -1.32
MSX1P28360 PDGFC-203ENST00000502773 4165 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
MSX1P28360 COLCA1-205ENST00000620864 8098 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
MSX1P28360 SLC36A2-201ENST00000335244 3421 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
MSX1P28360 ZRANB3-210ENST00000536680 6943 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
MSX1P28360 KYNUP1-201ENST00000466683 1406 ntBASIC6.83□□□□□ -1.32
MSX1P28360 ZNF780A-203ENST00000450241 7500 ntTSL 2 BASIC6.83□□□□□ -1.32
MSX1P28360 NRCAM-203ENST00000379024 5782 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
MSX1P28360 TMEM132B-206ENST00000613307 9659 ntAPPRIS ALT2 TSL 1 (best) BASIC6.83□□□□□ -1.32
MSX1P28360 OR4D10-201ENST00000530162 2482 ntAPPRIS P1 BASIC6.83□□□□□ -1.32
MSX1P28360 AC021074.3-201ENST00000476385 1825 ntTSL 2 BASIC6.83□□□□□ -1.32
MSX1P28360 TRIM51HP-202ENST00000530412 1823 ntBASIC6.83□□□□□ -1.32
MSX1P28360 DAZ2-208ENST00000400493 3516 ntAPPRIS ALT2 TSL 1 (best) BASIC6.83□□□□□ -1.32
MSX1P28360 AC093155.3-201ENST00000370548 2013 ntAPPRIS P1 TSL 2 BASIC6.83□□□□□ -1.32
MSX1P28360 NPIPB6-201ENST00000532254 2016 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
MSX1P28360 ZNF540-202ENST00000343599 3073 ntAPPRIS P3 TSL 5 BASIC6.82□□□□□ -1.32
MSX1P28360 ADGRL3-204ENST00000506720 4962 ntAPPRIS ALT2 TSL 5 BASIC6.82□□□□□ -1.32
MSX1P28360 CD46-201ENST00000322875 3278 ntAPPRIS P4 TSL 1 (best) BASIC6.82□□□□□ -1.32
MSX1P28360 CD46-207ENST00000367041 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC6.82□□□□□ -1.32
MSX1P28360 EYA1-202ENST00000340726 4326 ntAPPRIS P3 TSL 1 (best) BASIC6.82□□□□□ -1.32
MSX1P28360 NEXN-202ENST00000334785 2607 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
MSX1P28360 CHST12-201ENST00000258711 15979 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
MSX1P28360 HABP2-203ENST00000542051 2972 ntAPPRIS ALT2 TSL 2 BASIC6.82□□□□□ -1.32
MSX1P28360 SORBS1-219ENST00000607232 4374 ntAPPRIS ALT2 TSL 5 BASIC6.82□□□□□ -1.32
MSX1P28360 RPL7-204ENST00000396467 1526 ntTSL 3 BASIC6.82□□□□□ -1.32
MSX1P28360 FRMD7-203ENST00000464296 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC6.82□□□□□ -1.32
MSX1P28360 ENSA-204ENST00000356527 2546 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
MSX1P28360 PRRC1-204ENST00000512635 2726 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
MSX1P28360 FAM19A2-215ENST00000551619 2718 ntAPPRIS P1 TSL 2 BASIC6.82□□□□□ -1.32
MSX1P28360 HDAC9-201ENST00000401921 3254 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
MSX1P28360 NBPF26-204ENST00000615145 2656 ntTSL 5 BASIC6.82□□□□□ -1.32
MSX1P28360 AL359313.1-201ENST00000447311 2293 ntTSL 2 BASIC6.82□□□□□ -1.32
MSX1P28360 FCHSD2-205ENST00000409853 1867 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
MSX1P28360 IKZF3-213ENST00000439167 1879 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
MSX1P28360 MPEG1-201ENST00000361050 4442 ntAPPRIS P1 BASIC6.82□□□□□ -1.32
MSX1P28360 WDYHV1-208ENST00000523984 1491 ntTSL 2 BASIC6.82□□□□□ -1.32
MSX1P28360 SCG5-201ENST00000300175 1238 ntAPPRIS P4 TSL 1 (best) BASIC6.82□□□□□ -1.32
MSX1P28360 DEFB119-201ENST00000339144 484 ntAPPRIS ALT2 TSL 1 (best) BASIC6.82□□□□□ -1.32
MSX1P28360 AC005294.1-201ENST00000355509 281 ntBASIC6.82□□□□□ -1.32
MSX1P28360 RN7SKP211-201ENST00000363328 315 ntBASIC6.82□□□□□ -1.32
MSX1P28360 NFIB-202ENST00000380924 840 ntTSL 5 BASIC6.82□□□□□ -1.32
MSX1P28360 Y_RNA.401-201ENST00000383965 117 ntBASIC6.82□□□□□ -1.32
MSX1P28360 RNU6-74P-201ENST00000384235 107 ntBASIC6.82□□□□□ -1.32
MSX1P28360 RNU6-574P-201ENST00000384265 107 ntBASIC6.82□□□□□ -1.32
MSX1P28360 RNU6-510P-201ENST00000391239 108 ntBASIC6.82□□□□□ -1.32
MSX1P28360 AC113608.1-201ENST00000398740 305 ntBASIC6.82□□□□□ -1.32
MSX1P28360 AL450338.1-201ENST00000407987 512 ntBASIC6.82□□□□□ -1.32
MSX1P28360 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC6.82□□□□□ -1.32
MSX1P28360 RN7SKP137-201ENST00000411074 307 ntBASIC6.82□□□□□ -1.32
MSX1P28360 AC007349.3-201ENST00000415356 872 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
MSX1P28360 MRPL50P2-201ENST00000416821 482 ntBASIC6.82□□□□□ -1.32
MSX1P28360 ELOCP4-201ENST00000420090 333 ntBASIC6.82□□□□□ -1.32
MSX1P28360 AC017002.2-201ENST00000426124 792 ntTSL 2 BASIC6.82□□□□□ -1.32
MSX1P28360 SNX18P14-201ENST00000429308 574 ntBASIC6.82□□□□□ -1.32
MSX1P28360 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC6.82□□□□□ -1.32
MSX1P28360 AC012485.2-201ENST00000437372 982 ntTSL 5 BASIC6.82□□□□□ -1.32
MSX1P28360 AC002504.1-201ENST00000438281 691 ntBASIC6.82□□□□□ -1.32
MSX1P28360 AC007064.2-201ENST00000442403 500 ntTSL 5 BASIC6.82□□□□□ -1.32
MSX1P28360 Y_RNA.631-201ENST00000459607 101 ntBASIC6.82□□□□□ -1.32
MSX1P28360 AC073610.1-201ENST00000489971 396 ntBASIC6.82□□□□□ -1.32
MSX1P28360 AC106872.3-201ENST00000495104 446 ntBASIC6.82□□□□□ -1.32
MSX1P28360 LINC01182-201ENST00000503532 582 ntTSL 4 BASIC6.82□□□□□ -1.32
MSX1P28360 AC008243.1-202ENST00000506527 481 ntTSL 5 BASIC6.82□□□□□ -1.32
MSX1P28360 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC6.82□□□□□ -1.32
MSX1P28360 AF181450.1-201ENST00000522980 410 ntTSL 3 BASIC6.82□□□□□ -1.32
MSX1P28360 AP005597.2-201ENST00000526238 341 ntBASIC6.82□□□□□ -1.32
MSX1P28360 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC6.82□□□□□ -1.32
MSX1P28360 AP001922.2-201ENST00000530435 390 ntTSL 3 BASIC6.82□□□□□ -1.32
MSX1P28360 AC087241.2-201ENST00000535801 324 ntBASIC6.82□□□□□ -1.32
MSX1P28360 LRTOMT-215ENST00000538478 814 ntTSL 2 BASIC6.82□□□□□ -1.32
MSX1P28360 OR7G1-201ENST00000541538 936 ntAPPRIS P1 BASIC6.82□□□□□ -1.32
MSX1P28360 LINC01489-201ENST00000542689 605 ntTSL 5 BASIC6.82□□□□□ -1.32
MSX1P28360 GABARAPL1-212ENST00000543602 653 ntTSL 5 BASIC6.82□□□□□ -1.32
MSX1P28360 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC6.82□□□□□ -1.32
MSX1P28360 AC013356.3-201ENST00000558601 584 ntTSL 3 BASIC6.82□□□□□ -1.32
MSX1P28360 IGHV1OR15-3-201ENST00000564926 351 ntBASIC6.82□□□□□ -1.32
MSX1P28360 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC6.82□□□□□ -1.32
MSX1P28360 AC090125.1-201ENST00000581541 493 ntTSL 3 BASIC6.82□□□□□ -1.32
MSX1P28360 AP001180.3-201ENST00000582221 145 ntBASIC6.82□□□□□ -1.32
MSX1P28360 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC6.82□□□□□ -1.32
MSX1P28360 AL589863.1-201ENST00000595383 631 ntBASIC6.82□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 92.6 ms