Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AP002505.2-201ENST00000623585 696 ntBASIC3.87□□□□□ -1.79
HLA-DMBP28068 AP000648.2-201ENST00000624182 404 ntBASIC3.87□□□□□ -1.79
HLA-DMBP28068 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC3.87□□□□□ -1.79
HLA-DMBP28068 ASAH1-224ENST00000636269 685 ntTSL 3 BASIC3.87□□□□□ -1.79
HLA-DMBP28068 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC3.87□□□□□ -1.79
HLA-DMBP28068 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
HLA-DMBP28068 AC007996.1-201ENST00000620414 2821 ntBASIC3.87□□□□□ -1.79
HLA-DMBP28068 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
HLA-DMBP28068 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC3.87□□□□□ -1.79
HLA-DMBP28068 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
HLA-DMBP28068 ZNF468-203ENST00000595646 4407 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
HLA-DMBP28068 IRAK4-203ENST00000448290 1381 ntTSL 5 BASIC3.87□□□□□ -1.79
HLA-DMBP28068 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC3.87□□□□□ -1.79
HLA-DMBP28068 MAPK10-320ENST00000641462 6696 ntBASIC3.87□□□□□ -1.79
HLA-DMBP28068 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
HLA-DMBP28068 GLCE-201ENST00000261858 5037 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
HLA-DMBP28068 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC3.86□□□□□ -1.79
HLA-DMBP28068 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC3.86□□□□□ -1.79
HLA-DMBP28068 CAST-201ENST00000309190 4282 ntAPPRIS P3 TSL 1 (best) BASIC3.86□□□□□ -1.79
HLA-DMBP28068 CLSPN-203ENST00000373220 3977 ntAPPRIS ALT2 TSL 1 (best) BASIC3.86□□□□□ -1.79
HLA-DMBP28068 PCGEM1-201ENST00000454040 1590 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
HLA-DMBP28068 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
HLA-DMBP28068 STAU2-210ENST00000521210 1950 ntTSL 2 BASIC3.86□□□□□ -1.79
HLA-DMBP28068 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC3.86□□□□□ -1.79
HLA-DMBP28068 SNORA70-201ENST00000384436 135 ntBASIC3.86□□□□□ -1.79
HLA-DMBP28068 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC3.86□□□□□ -1.79
HLA-DMBP28068 MRM2-202ENST00000407040 582 ntTSL 3 BASIC3.86□□□□□ -1.79
HLA-DMBP28068 MIR1271-201ENST00000408537 86 ntBASIC3.86□□□□□ -1.79
HLA-DMBP28068 DPPA2P3-201ENST00000411853 655 ntBASIC3.86□□□□□ -1.79
HLA-DMBP28068 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC3.86□□□□□ -1.79
HLA-DMBP28068 AC021035.1-201ENST00000421597 427 ntTSL 3 BASIC3.86□□□□□ -1.79
HLA-DMBP28068 OR5M12P-201ENST00000423388 929 ntBASIC3.86□□□□□ -1.79
HLA-DMBP28068 AL359853.3-201ENST00000423879 544 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
HLA-DMBP28068 AC012519.1-201ENST00000424588 610 ntBASIC3.86□□□□□ -1.79
HLA-DMBP28068 LINC02096-201ENST00000445035 953 ntTSL 5 BASIC3.86□□□□□ -1.79
HLA-DMBP28068 AL157385.1-201ENST00000446973 268 ntBASIC3.86□□□□□ -1.79
HLA-DMBP28068 RPL7L1P1-201ENST00000448259 785 ntBASIC3.86□□□□□ -1.79
HLA-DMBP28068 AP000472.1-201ENST00000452500 530 ntTSL 2 BASIC3.86□□□□□ -1.79
HLA-DMBP28068 AC002553.2-201ENST00000453217 340 ntBASIC3.86□□□□□ -1.79
HLA-DMBP28068 RPS18P6-201ENST00000476880 458 ntBASIC3.86□□□□□ -1.79
HLA-DMBP28068 RPL21P6-201ENST00000479171 504 ntBASIC3.86□□□□□ -1.79
HLA-DMBP28068 AC016651.1-201ENST00000502680 822 ntTSL 3 BASIC3.86□□□□□ -1.79
HLA-DMBP28068 AC147055.3-201ENST00000510547 851 ntBASIC3.86□□□□□ -1.79
HLA-DMBP28068 RPL26L1-203ENST00000519239 679 ntAPPRIS P1 TSL 2 BASIC3.86□□□□□ -1.79
HLA-DMBP28068 AC008575.1-201ENST00000520401 694 ntAPPRIS P1 TSL 3 BASIC3.86□□□□□ -1.79
HLA-DMBP28068 AP002373.2-201ENST00000541631 1060 ntBASIC3.86□□□□□ -1.79
HLA-DMBP28068 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC3.86□□□□□ -1.79
HLA-DMBP28068 AC011840.5-201ENST00000582125 771 ntBASIC3.86□□□□□ -1.79
HLA-DMBP28068 MYLK-221ENST00000583087 678 ntTSL 4 BASIC3.86□□□□□ -1.79
HLA-DMBP28068 AC009303.2-201ENST00000585381 1083 ntTSL 3 BASIC3.86□□□□□ -1.79
HLA-DMBP28068 AC006504.5-212ENST00000587188 746 ntTSL 3 BASIC3.86□□□□□ -1.79
HLA-DMBP28068 UBA52-209ENST00000597451 514 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
HLA-DMBP28068 AC002128.2-201ENST00000604161 618 ntTSL 5 BASIC3.86□□□□□ -1.79
HLA-DMBP28068 AC073575.2-201ENST00000614212 627 ntBASIC3.86□□□□□ -1.79
HLA-DMBP28068 AL353770.4-201ENST00000614936 468 ntTSL 5 BASIC3.86□□□□□ -1.79
HLA-DMBP28068 AL590491.2-203ENST00000614969 468 ntTSL 4 BASIC3.86□□□□□ -1.79
HLA-DMBP28068 AC018445.2-201ENST00000622987 260 ntBASIC3.86□□□□□ -1.79
HLA-DMBP28068 SATB1-AS1-263ENST00000630022 622 ntTSL 5 BASIC3.86□□□□□ -1.79
HLA-DMBP28068 PHACTR2P1-202ENST00000636592 773 ntTSL 5 BASIC3.86□□□□□ -1.79
HLA-DMBP28068 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
HLA-DMBP28068 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC3.86□□□□□ -1.79
HLA-DMBP28068 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC3.86□□□□□ -1.79
HLA-DMBP28068 C9orf135-AS1-201ENST00000439418 1375 ntTSL 2 BASIC3.86□□□□□ -1.79
HLA-DMBP28068 CASC19-255ENST00000641733 1385 ntBASIC3.86□□□□□ -1.79
HLA-DMBP28068 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC3.86□□□□□ -1.79
HLA-DMBP28068 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC3.86□□□□□ -1.79
HLA-DMBP28068 ARID2-205ENST00000444670 7316 ntTSL 1 (best) BASIC3.86□□□□□ -1.79
HLA-DMBP28068 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
HLA-DMBP28068 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
HLA-DMBP28068 AC120338.1-201ENST00000625074 1541 ntBASIC3.85□□□□□ -1.79
HLA-DMBP28068 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC3.85□□□□□ -1.79
HLA-DMBP28068 AL034370.1-201ENST00000397254 1590 ntBASIC3.85□□□□□ -1.79
HLA-DMBP28068 AP000542.2-201ENST00000623199 6179 ntBASIC3.85□□□□□ -1.79
HLA-DMBP28068 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
HLA-DMBP28068 AC011493.1-201ENST00000596753 1632 ntBASIC3.85□□□□□ -1.79
HLA-DMBP28068 AC019197.1-201ENST00000638199 3611 ntTSL 5 BASIC3.85□□□□□ -1.79
HLA-DMBP28068 OR9G1-202ENST00000642097 3611 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
HLA-DMBP28068 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC3.85□□□□□ -1.79
HLA-DMBP28068 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC3.85□□□□□ -1.79
HLA-DMBP28068 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
HLA-DMBP28068 STX3-208ENST00000641815 3236 ntBASIC3.85□□□□□ -1.79
HLA-DMBP28068 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
HLA-DMBP28068 AC015813.6-201ENST00000624409 5808 ntBASIC3.85□□□□□ -1.79
HLA-DMBP28068 RNA5SP183-201ENST00000362452 119 ntBASIC3.85□□□□□ -1.79
HLA-DMBP28068 TEX36-201ENST00000368821 922 ntAPPRIS P3 TSL 1 (best) BASIC3.85□□□□□ -1.79
HLA-DMBP28068 SNORA2.3-201ENST00000383920 135 ntBASIC3.85□□□□□ -1.79
HLA-DMBP28068 MIR600-201ENST00000385007 98 ntBASIC3.85□□□□□ -1.79
HLA-DMBP28068 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
HLA-DMBP28068 AL158154.1-201ENST00000427387 465 ntTSL 3 BASIC3.85□□□□□ -1.79
HLA-DMBP28068 AL161457.1-201ENST00000434656 905 ntTSL 5 BASIC3.85□□□□□ -1.79
HLA-DMBP28068 CNOT7P2-201ENST00000441051 832 ntBASIC3.85□□□□□ -1.79
HLA-DMBP28068 FMR1-IT1-201ENST00000441414 343 ntTSL 5 BASIC3.85□□□□□ -1.79
HLA-DMBP28068 LINC01133-202ENST00000443364 1266 ntTSL 5 BASIC3.85□□□□□ -1.79
HLA-DMBP28068 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
HLA-DMBP28068 AL356981.1-201ENST00000454879 684 ntBASIC3.85□□□□□ -1.79
HLA-DMBP28068 AC093166.2-201ENST00000455969 1017 ntBASIC3.85□□□□□ -1.79
HLA-DMBP28068 RN7SL610P-201ENST00000463845 291 ntBASIC3.85□□□□□ -1.79
HLA-DMBP28068 RPL7P6-201ENST00000480903 738 ntBASIC3.85□□□□□ -1.79
HLA-DMBP28068 AC004815.1-201ENST00000484185 331 ntBASIC3.85□□□□□ -1.79
HLA-DMBP28068 RPS4XP20-201ENST00000505751 772 ntBASIC3.85□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 131.2 ms