Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC7.91□□□□□ -1.14
COL9A1P20849 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC7.91□□□□□ -1.14
COL9A1P20849 AC124854.1-202ENST00000513779 339 ntTSL 3 BASIC7.91□□□□□ -1.14
COL9A1P20849 OR5M4P-201ENST00000529436 925 ntBASIC7.91□□□□□ -1.14
COL9A1P20849 AC090673.2-201ENST00000544279 454 ntTSL 3 BASIC7.91□□□□□ -1.14
COL9A1P20849 AL390726.5-202ENST00000564800 256 ntBASIC7.91□□□□□ -1.14
COL9A1P20849 MIR548Y-201ENST00000582739 110 ntBASIC7.91□□□□□ -1.14
COL9A1P20849 MIR205HG-210ENST00000603283 455 ntTSL 3 BASIC7.91□□□□□ -1.14
COL9A1P20849 COX6CP16-201ENST00000603667 216 ntBASIC7.91□□□□□ -1.14
COL9A1P20849 AC109309.2-201ENST00000612597 332 ntBASIC7.91□□□□□ -1.14
COL9A1P20849 pRNA.12-201ENST00000614353 90 ntBASIC7.91□□□□□ -1.14
COL9A1P20849 pRNA.3-201ENST00000615048 90 ntBASIC7.91□□□□□ -1.14
COL9A1P20849 AC007485.1-201ENST00000616755 206 ntBASIC7.91□□□□□ -1.14
COL9A1P20849 MIR6849-201ENST00000618543 69 ntBASIC7.91□□□□□ -1.14
COL9A1P20849 AL161457.2-202ENST00000629161 743 ntTSL 5 BASIC7.91□□□□□ -1.14
COL9A1P20849 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC7.91□□□□□ -1.14
COL9A1P20849 ZNF441-201ENST00000357901 4356 ntAPPRIS P1 TSL 3 BASIC7.91□□□□□ -1.14
COL9A1P20849 CDY4P-201ENST00000418290 1513 ntBASIC7.91□□□□□ -1.14
COL9A1P20849 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC7.91□□□□□ -1.14
COL9A1P20849 AC114401.1-201ENST00000484222 2084 ntTSL 2 BASIC7.91□□□□□ -1.14
COL9A1P20849 SEMA5A-201ENST00000382496 11762 ntAPPRIS P1 TSL 1 (best) BASIC7.91□□□□□ -1.14
COL9A1P20849 NUP214-208ENST00000483497 3275 ntTSL 2 BASIC7.91□□□□□ -1.14
COL9A1P20849 DCAF6-202ENST00000367840 3349 ntAPPRIS ALT2 TSL 1 (best) BASIC7.91□□□□□ -1.14
COL9A1P20849 CPNE8-201ENST00000331366 3489 ntAPPRIS P2 TSL 1 (best) BASIC7.91□□□□□ -1.14
COL9A1P20849 AL358473.1-202ENST00000458003 3496 ntTSL 1 (best) BASIC7.91□□□□□ -1.14
COL9A1P20849 TMCC1-AS1-204ENST00000605830 3496 ntTSL 2 BASIC7.91□□□□□ -1.14
COL9A1P20849 ZNF430-201ENST00000261560 3923 ntAPPRIS P1 TSL 1 (best) BASIC7.91□□□□□ -1.14
COL9A1P20849 SKIV2L2-201ENST00000230640 4192 ntAPPRIS P1 TSL 1 (best) BASIC7.91□□□□□ -1.14
COL9A1P20849 PTPRT-207ENST00000373201 12660 ntAPPRIS ALT2 TSL 5 BASIC7.91□□□□□ -1.14
COL9A1P20849 DDX21-201ENST00000354185 4711 ntAPPRIS P1 TSL 1 (best) BASIC7.91□□□□□ -1.14
COL9A1P20849 TNFAIP8-206ENST00000504771 8681 ntTSL 1 (best) BASIC7.91□□□□□ -1.14
COL9A1P20849 SLFN13-211ENST00000542635 5921 ntAPPRIS P1 TSL 1 (best) BASIC7.9□□□□□ -1.14
COL9A1P20849 MRO-211ENST00000610511 5257 ntAPPRIS P1 TSL 1 (best) BASIC7.9□□□□□ -1.14
COL9A1P20849 SLC31A1-201ENST00000374212 4744 ntAPPRIS P1 TSL 1 (best) BASIC7.9□□□□□ -1.14
COL9A1P20849 TNIK-211ENST00000475336 3807 ntAPPRIS ALT2 TSL 1 (best) BASIC7.9□□□□□ -1.14
COL9A1P20849 AIG1-209ENST00000629020 3636 ntTSL 2 BASIC7.9□□□□□ -1.14
COL9A1P20849 DIAPH3-201ENST00000267215 3449 ntAPPRIS ALT2 TSL 1 (best) BASIC7.9□□□□□ -1.14
COL9A1P20849 GPBP1-204ENST00000506184 2857 ntAPPRIS P3 TSL 1 (best) BASIC7.9□□□□□ -1.14
COL9A1P20849 MS4A10-201ENST00000308287 2296 ntAPPRIS P1 TSL 1 (best) BASIC7.9□□□□□ -1.14
COL9A1P20849 CLCN3P1-202ENST00000609203 1944 ntTSL 2 BASIC7.9□□□□□ -1.14
COL9A1P20849 THRB-IT1-201ENST00000425296 1754 ntTSL 2 BASIC7.9□□□□□ -1.14
COL9A1P20849 SLC5A1-201ENST00000266088 5061 ntAPPRIS P1 TSL 1 (best) BASIC7.9□□□□□ -1.14
COL9A1P20849 CLASP1-215ENST00000541377 7909 ntTSL 5 BASIC7.9□□□□□ -1.14
COL9A1P20849 CHN1-204ENST00000409597 1445 ntTSL 3 BASIC7.9□□□□□ -1.14
COL9A1P20849 OGDH-210ENST00000631326 4116 ntTSL 5 BASIC7.9□□□□□ -1.14
COL9A1P20849 TTC21A-205ENST00000440121 3941 ntAPPRIS P3 TSL 2 BASIC7.9□□□□□ -1.14
COL9A1P20849 Y_RNA.252-201ENST00000364556 101 ntBASIC7.9□□□□□ -1.14
COL9A1P20849 IGKC-201ENST00000390237 523 ntAPPRIS P1 BASIC7.9□□□□□ -1.14
COL9A1P20849 RNU6-1109P-201ENST00000391187 107 ntBASIC7.9□□□□□ -1.14
COL9A1P20849 AC113608.1-201ENST00000398740 305 ntBASIC7.9□□□□□ -1.14
COL9A1P20849 HMGB1P17-201ENST00000403495 628 ntBASIC7.9□□□□□ -1.14
COL9A1P20849 RN7SKP206-201ENST00000410823 293 ntBASIC7.9□□□□□ -1.14
COL9A1P20849 RNU6-954P-201ENST00000411355 107 ntBASIC7.9□□□□□ -1.14
COL9A1P20849 AC064875.1-203ENST00000422996 582 ntTSL 4 BASIC7.9□□□□□ -1.14
COL9A1P20849 AC007556.1-201ENST00000432133 307 ntTSL 2 BASIC7.9□□□□□ -1.14
COL9A1P20849 AL731892.1-201ENST00000437364 1192 ntBASIC7.9□□□□□ -1.14
COL9A1P20849 RPL21P23-201ENST00000446654 460 ntBASIC7.9□□□□□ -1.14
COL9A1P20849 AC005517.1-201ENST00000452091 489 ntBASIC7.9□□□□□ -1.14
COL9A1P20849 HMGB1P15-201ENST00000453854 435 ntBASIC7.9□□□□□ -1.14
COL9A1P20849 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC7.9□□□□□ -1.14
COL9A1P20849 RN7SL19P-201ENST00000462522 306 ntBASIC7.9□□□□□ -1.14
COL9A1P20849 AC008571.1-201ENST00000467232 300 ntBASIC7.9□□□□□ -1.14
COL9A1P20849 AC092451.1-201ENST00000480211 153 ntBASIC7.9□□□□□ -1.14
COL9A1P20849 RN7SL868P-201ENST00000485915 303 ntBASIC7.9□□□□□ -1.14
COL9A1P20849 AC114956.1-201ENST00000504277 512 ntTSL 5 BASIC7.9□□□□□ -1.14
COL9A1P20849 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC7.9□□□□□ -1.14
COL9A1P20849 AC095059.2-201ENST00000510601 933 ntBASIC7.9□□□□□ -1.14
COL9A1P20849 RNU6-1334P-201ENST00000516032 105 ntBASIC7.9□□□□□ -1.14
COL9A1P20849 RNU6-714P-201ENST00000516963 103 ntBASIC7.9□□□□□ -1.14
COL9A1P20849 AC008663.1-201ENST00000519821 455 ntTSL 4 BASIC7.9□□□□□ -1.14
COL9A1P20849 AP003472.2-201ENST00000523554 639 ntTSL 3 BASIC7.9□□□□□ -1.14
COL9A1P20849 RRN3P3-201ENST00000549207 578 ntBASIC7.9□□□□□ -1.14
COL9A1P20849 MIR3118-1-201ENST00000581787 76 ntBASIC7.9□□□□□ -1.14
COL9A1P20849 AC074135.1-202ENST00000600223 563 ntTSL 3 BASIC7.9□□□□□ -1.14
COL9A1P20849 AC245052.7-201ENST00000601161 359 ntBASIC7.9□□□□□ -1.14
COL9A1P20849 AC008738.6-201ENST00000604605 569 ntTSL 4 BASIC7.9□□□□□ -1.14
COL9A1P20849 AC004805.2-201ENST00000605382 482 ntBASIC7.9□□□□□ -1.14
COL9A1P20849 RN7SL778P-201ENST00000607160 297 ntBASIC7.9□□□□□ -1.14
COL9A1P20849 AC018690.1-201ENST00000608144 626 ntBASIC7.9□□□□□ -1.14
COL9A1P20849 TSPAN6-205ENST00000614008 900 ntTSL 5 BASIC7.9□□□□□ -1.14
COL9A1P20849 LINC00836-201ENST00000625325 582 ntTSL 4 BASIC7.9□□□□□ -1.14
COL9A1P20849 AF067845.4-201ENST00000633198 480 ntTSL 3 BASIC7.9□□□□□ -1.14
COL9A1P20849 JAML-213ENST00000640745 951 ntTSL 5 BASIC7.9□□□□□ -1.14
COL9A1P20849 LRRC37A-202ENST00000393465 4997 ntAPPRIS ALT2 TSL 5 BASIC7.9□□□□□ -1.15
COL9A1P20849 C2CD3-201ENST00000313663 6283 ntAPPRIS P3 TSL 1 (best) BASIC7.9□□□□□ -1.15
COL9A1P20849 CASP8-203ENST00000323492 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC7.9□□□□□ -1.15
COL9A1P20849 AL445933.1-201ENST00000434240 2242 ntBASIC7.9□□□□□ -1.15
COL9A1P20849 KIAA1671-206ENST00000637069 6510 ntAPPRIS ALT2 TSL 5 BASIC7.9□□□□□ -1.15
COL9A1P20849 CD109-202ENST00000422508 9221 ntAPPRIS ALT1 TSL 1 (best) BASIC7.9□□□□□ -1.15
COL9A1P20849 LINC00410-201ENST00000419272 2018 ntTSL 2 BASIC7.9□□□□□ -1.15
COL9A1P20849 AFP-201ENST00000226359 1914 ntTSL 5 BASIC7.9□□□□□ -1.15
COL9A1P20849 MPEG1-201ENST00000361050 4442 ntAPPRIS P1 BASIC7.89□□□□□ -1.15
COL9A1P20849 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC7.89□□□□□ -1.15
COL9A1P20849 SLC34A2-201ENST00000382051 4122 ntAPPRIS P3 TSL 1 (best) BASIC7.89□□□□□ -1.15
COL9A1P20849 MTHFD1P1-201ENST00000413059 2764 ntBASIC7.89□□□□□ -1.15
COL9A1P20849 ANKFN1-202ENST00000566473 3840 ntAPPRIS ALT2 TSL 5 BASIC7.89□□□□□ -1.15
COL9A1P20849 SOX6-210ENST00000528252 2707 ntAPPRIS ALT2 TSL 2 BASIC7.89□□□□□ -1.15
COL9A1P20849 LINC01105-204ENST00000444416 2695 ntTSL 2 BASIC7.89□□□□□ -1.15
COL9A1P20849 AC130360.2-201ENST00000533477 1556 ntBASIC7.89□□□□□ -1.15
COL9A1P20849 CCDC102B-210ENST00000584156 1554 ntTSL 1 (best) BASIC7.89□□□□□ -1.15
Retrieved 100 of 98,524 protein–RNA pairs in 89.1 ms