Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
HMGCS2P54868 NAT2-201ENST00000286479 1322 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
HMGCS2P54868 ZNF790-201ENST00000356725 3037 ntAPPRIS P1 TSL 2 BASIC5.72□□□□□ -1.49
HMGCS2P54868 NCLP2-201ENST00000416078 1462 ntBASIC5.72□□□□□ -1.49
HMGCS2P54868 ZNF559-201ENST00000317221 2732 ntTSL 2 BASIC5.72□□□□□ -1.49
HMGCS2P54868 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
HMGCS2P54868 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
HMGCS2P54868 COX6CP13-201ENST00000428703 226 ntBASIC5.72□□□□□ -1.49
HMGCS2P54868 CNOT7P1-201ENST00000429006 852 ntBASIC5.72□□□□□ -1.49
HMGCS2P54868 KATNBL1P2-201ENST00000433311 835 ntBASIC5.72□□□□□ -1.49
HMGCS2P54868 BTG3P1-201ENST00000435859 716 ntBASIC5.72□□□□□ -1.49
HMGCS2P54868 ATP6V0E1P2-201ENST00000441771 245 ntBASIC5.72□□□□□ -1.49
HMGCS2P54868 AC004980.3-201ENST00000447046 365 ntBASIC5.72□□□□□ -1.49
HMGCS2P54868 CEACAMP6-201ENST00000452007 574 ntBASIC5.72□□□□□ -1.49
HMGCS2P54868 AC005412.2-201ENST00000492004 341 ntBASIC5.72□□□□□ -1.49
HMGCS2P54868 AC109439.2-201ENST00000502421 564 ntTSL 4 BASIC5.72□□□□□ -1.49
HMGCS2P54868 RNU6-964P-201ENST00000516524 69 ntBASIC5.72□□□□□ -1.49
HMGCS2P54868 LINC00589-202ENST00000518623 938 ntTSL 4 BASIC5.72□□□□□ -1.49
HMGCS2P54868 OR5M2P-201ENST00000529003 936 ntBASIC5.72□□□□□ -1.49
HMGCS2P54868 AC007527.1-202ENST00000543347 382 ntTSL 3 BASIC5.72□□□□□ -1.49
HMGCS2P54868 LINC02303-204ENST00000555442 889 ntTSL 3 BASIC5.72□□□□□ -1.49
HMGCS2P54868 AC009139.2-201ENST00000569032 566 ntTSL 5 BASIC5.72□□□□□ -1.49
HMGCS2P54868 BCAR4-204ENST00000573319 1273 ntTSL 5 BASIC5.72□□□□□ -1.49
HMGCS2P54868 AC025857.2-201ENST00000602711 238 ntBASIC5.72□□□□□ -1.49
HMGCS2P54868 AC108359.1-201ENST00000616451 1211 ntBASIC5.72□□□□□ -1.49
HMGCS2P54868 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
HMGCS2P54868 ZNF284-201ENST00000421176 4351 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
HMGCS2P54868 ZNF273-204ENST00000476120 2000 ntAPPRIS P1 TSL 3 BASIC5.72□□□□□ -1.49
HMGCS2P54868 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
HMGCS2P54868 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
HMGCS2P54868 RFX4-201ENST00000229387 3378 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
HMGCS2P54868 ACE2-201ENST00000252519 3393 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
HMGCS2P54868 UNC5C-205ENST00000610318 9403 ntTSL 5 BASIC5.72□□□□□ -1.49
HMGCS2P54868 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC5.72□□□□□ -1.49
HMGCS2P54868 AC021074.3-201ENST00000476385 1825 ntTSL 2 BASIC5.71□□□□□ -1.49
HMGCS2P54868 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC5.71□□□□□ -1.49
HMGCS2P54868 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC5.71□□□□□ -1.49
HMGCS2P54868 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC5.71□□□□□ -1.49
HMGCS2P54868 KLHL41-201ENST00000284669 2464 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.49
HMGCS2P54868 SUPT3H-203ENST00000371460 2389 ntAPPRIS P4 TSL 1 (best) BASIC5.71□□□□□ -1.5
HMGCS2P54868 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC5.71□□□□□ -1.5
HMGCS2P54868 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC5.71□□□□□ -1.5
HMGCS2P54868 OR8A1-201ENST00000284287 1146 ntAPPRIS P1 BASIC5.71□□□□□ -1.5
HMGCS2P54868 RNA5-8SP7-201ENST00000363443 155 ntBASIC5.71□□□□□ -1.5
HMGCS2P54868 AC068538.1-201ENST00000376856 336 ntBASIC5.71□□□□□ -1.5
HMGCS2P54868 LRRC37BP1-201ENST00000398851 714 ntBASIC5.71□□□□□ -1.5
HMGCS2P54868 NPM1P38-201ENST00000403835 865 ntBASIC5.71□□□□□ -1.5
HMGCS2P54868 AL356967.1-201ENST00000406305 431 ntBASIC5.71□□□□□ -1.5
HMGCS2P54868 TBCAP2-201ENST00000416175 326 ntBASIC5.71□□□□□ -1.5
HMGCS2P54868 CENPIP1-201ENST00000425713 902 ntBASIC5.71□□□□□ -1.5
HMGCS2P54868 AL450023.3-201ENST00000440592 271 ntBASIC5.71□□□□□ -1.5
HMGCS2P54868 AP001434.1-201ENST00000444977 287 ntTSL 3 BASIC5.71□□□□□ -1.5
HMGCS2P54868 AP000402.1-201ENST00000446404 540 ntTSL 3 BASIC5.71□□□□□ -1.5
HMGCS2P54868 RN7SL441P-201ENST00000492388 296 ntBASIC5.71□□□□□ -1.5
HMGCS2P54868 AK3P4-201ENST00000504283 583 ntBASIC5.71□□□□□ -1.5
HMGCS2P54868 AC117383.1-201ENST00000507698 422 ntTSL 3 BASIC5.71□□□□□ -1.5
HMGCS2P54868 FGB-207ENST00000509493 1164 ntTSL 5 BASIC5.71□□□□□ -1.5
HMGCS2P54868 ENPP7P9-201ENST00000514456 627 ntBASIC5.71□□□□□ -1.5
HMGCS2P54868 MRE11-209ENST00000540013 1212 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
HMGCS2P54868 AC069234.2-201ENST00000541383 575 ntTSL 3 BASIC5.71□□□□□ -1.5
HMGCS2P54868 LINC02307-201ENST00000553827 257 ntTSL 3 BASIC5.71□□□□□ -1.5
HMGCS2P54868 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC5.71□□□□□ -1.5
HMGCS2P54868 RN7SL290P-201ENST00000578661 300 ntBASIC5.71□□□□□ -1.5
HMGCS2P54868 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
HMGCS2P54868 DAB1-AS1-208ENST00000586465 748 ntTSL 5 BASIC5.71□□□□□ -1.5
HMGCS2P54868 AC020915.5-201ENST00000596836 964 ntBASIC5.71□□□□□ -1.5
HMGCS2P54868 LINC01198-207ENST00000598084 881 ntTSL 5 BASIC5.71□□□□□ -1.5
HMGCS2P54868 AC007497.1-201ENST00000610421 561 ntBASIC5.71□□□□□ -1.5
HMGCS2P54868 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC5.71□□□□□ -1.5
HMGCS2P54868 CR381572.2-201ENST00000624852 397 ntBASIC5.71□□□□□ -1.5
HMGCS2P54868 AC239809.3-202ENST00000628902 686 ntTSL 5 BASIC5.71□□□□□ -1.5
HMGCS2P54868 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC5.71□□□□□ -1.5
HMGCS2P54868 RNF150-202ENST00000420921 3673 ntTSL 2 BASIC5.71□□□□□ -1.5
HMGCS2P54868 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
HMGCS2P54868 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
HMGCS2P54868 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
HMGCS2P54868 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
HMGCS2P54868 VSNL1-203ENST00000406397 2725 ntAPPRIS P1 TSL 5 BASIC5.7□□□□□ -1.5
HMGCS2P54868 NBPF26-202ENST00000611287 2701 ntTSL 5 BASIC5.7□□□□□ -1.5
HMGCS2P54868 NBPF14-211ENST00000621070 2701 ntTSL 5 BASIC5.7□□□□□ -1.5
HMGCS2P54868 RNF217-201ENST00000359704 1784 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
HMGCS2P54868 RNF217-202ENST00000368414 1771 ntTSL 2 BASIC5.7□□□□□ -1.5
HMGCS2P54868 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
HMGCS2P54868 ENSA-214ENST00000513281 1369 ntTSL 2 BASIC5.7□□□□□ -1.5
HMGCS2P54868 NDRG3-202ENST00000359675 2917 ntAPPRIS ALT1 TSL 1 (best) BASIC5.7□□□□□ -1.5
HMGCS2P54868 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
HMGCS2P54868 SNORA48.4-201ENST00000391089 134 ntBASIC5.7□□□□□ -1.5
HMGCS2P54868 U3.30-201ENST00000391308 210 ntBASIC5.7□□□□□ -1.5
HMGCS2P54868 RNA5SP241-201ENST00000391326 114 ntBASIC5.7□□□□□ -1.5
HMGCS2P54868 AL357515.1-201ENST00000402967 542 ntBASIC5.7□□□□□ -1.5
HMGCS2P54868 AL031428.1-201ENST00000427154 666 ntTSL 2 BASIC5.7□□□□□ -1.5
HMGCS2P54868 CCNB1IP1P2-201ENST00000432876 818 ntBASIC5.7□□□□□ -1.5
HMGCS2P54868 AL691482.1-201ENST00000453255 87 ntBASIC5.7□□□□□ -1.5
HMGCS2P54868 RPS23P7-201ENST00000466210 444 ntBASIC5.7□□□□□ -1.5
HMGCS2P54868 AC092925.1-201ENST00000470739 493 ntTSL 3 BASIC5.7□□□□□ -1.5
HMGCS2P54868 AC090058.1-201ENST00000498788 435 ntBASIC5.7□□□□□ -1.5
HMGCS2P54868 AC068413.1-201ENST00000517739 776 ntTSL 5 BASIC5.7□□□□□ -1.5
HMGCS2P54868 AC009643.1-201ENST00000532030 391 ntBASIC5.7□□□□□ -1.5
HMGCS2P54868 AP005436.3-201ENST00000532849 572 ntTSL 5 BASIC5.7□□□□□ -1.5
HMGCS2P54868 NDUFB4P11-201ENST00000560510 395 ntBASIC5.7□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 99.3 ms