Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AP005209.1-201ENST00000582531 928 ntTSL 5 BASIC5.58□□□□□ -1.52
PTPN9P43378 BMS1P7-201ENST00000602440 1052 ntBASIC5.58□□□□□ -1.52
PTPN9P43378 AL359513.1-201ENST00000614364 557 ntBASIC5.58□□□□□ -1.52
PTPN9P43378 SYNJ2BP-COX16-205ENST00000621525 929 ntAPPRIS P2 TSL 2 BASIC5.58□□□□□ -1.52
PTPN9P43378 AC068880.4-201ENST00000623082 495 ntBASIC5.58□□□□□ -1.52
PTPN9P43378 CU638689.1-201ENST00000623225 897 ntTSL 3 BASIC5.58□□□□□ -1.52
PTPN9P43378 CU634019.4-201ENST00000623347 897 ntTSL 3 BASIC5.58□□□□□ -1.52
PTPN9P43378 SNAP23-222ENST00000626061 237 ntTSL 5 BASIC5.58□□□□□ -1.52
PTPN9P43378 SNAP23-223ENST00000627440 210 ntTSL 5 BASIC5.58□□□□□ -1.52
PTPN9P43378 SAMMSON-209ENST00000641222 1100 ntBASIC5.58□□□□□ -1.52
PTPN9P43378 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
PTPN9P43378 TSPAN6-204ENST00000612152 3796 ntTSL 5 BASIC5.58□□□□□ -1.52
PTPN9P43378 MTND5P23-201ENST00000430812 1655 ntBASIC5.58□□□□□ -1.52
PTPN9P43378 ATF2-201ENST00000264110 4176 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
PTPN9P43378 CNGA1-202ENST00000402813 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
PTPN9P43378 AL138820.1-201ENST00000617901 5305 ntBASIC5.58□□□□□ -1.52
PTPN9P43378 TRAPPC6B-201ENST00000330149 3242 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
PTPN9P43378 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC5.58□□□□□ -1.52
PTPN9P43378 DAZ4-205ENST00000440066 1891 ntTSL 5 BASIC5.58□□□□□ -1.52
PTPN9P43378 DAZ1-206ENST00000620725 1891 ntTSL 5 BASIC5.58□□□□□ -1.52
PTPN9P43378 AC007382.1-201ENST00000624376 2618 ntBASIC5.58□□□□□ -1.52
PTPN9P43378 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
PTPN9P43378 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
PTPN9P43378 ADAM29-203ENST00000445694 3244 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
PTPN9P43378 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
PTPN9P43378 AL121839.2-201ENST00000565058 6943 ntBASIC5.57□□□□□ -1.52
PTPN9P43378 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC5.57□□□□□ -1.52
PTPN9P43378 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC5.57□□□□□ -1.52
PTPN9P43378 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC5.57□□□□□ -1.52
PTPN9P43378 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC5.57□□□□□ -1.52
PTPN9P43378 OR9G4-201ENST00000302957 984 ntBASIC5.57□□□□□ -1.52
PTPN9P43378 C11orf40-201ENST00000307616 654 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
PTPN9P43378 OR4K17-201ENST00000315543 1032 ntBASIC5.57□□□□□ -1.52
PTPN9P43378 MRRF-207ENST00000373729 870 ntTSL 3 BASIC5.57□□□□□ -1.52
PTPN9P43378 AC009804.1-201ENST00000400949 179 ntBASIC5.57□□□□□ -1.52
PTPN9P43378 ATP5F1P6-201ENST00000402768 767 ntBASIC5.57□□□□□ -1.52
PTPN9P43378 RNU6ATAC18P-201ENST00000408413 101 ntBASIC5.57□□□□□ -1.52
PTPN9P43378 BCL11A-205ENST00000409351 756 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
PTPN9P43378 PSMA3-202ENST00000412908 908 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
PTPN9P43378 AL136231.1-201ENST00000429407 730 ntBASIC5.57□□□□□ -1.52
PTPN9P43378 AL049749.1-201ENST00000430281 632 ntTSL 2 BASIC5.57□□□□□ -1.52
PTPN9P43378 MIR99AHG-205ENST00000435697 716 ntTSL 2 BASIC5.57□□□□□ -1.52
PTPN9P43378 AL391987.1-201ENST00000441025 200 ntBASIC5.57□□□□□ -1.52
PTPN9P43378 KCNMB2-AS1-205ENST00000451742 844 ntTSL 4 BASIC5.57□□□□□ -1.52
PTPN9P43378 DNAJB5P1-201ENST00000454004 806 ntBASIC5.57□□□□□ -1.52
PTPN9P43378 AL023584.2-201ENST00000454411 444 ntTSL 5 BASIC5.57□□□□□ -1.52
PTPN9P43378 ATP5G1P3-201ENST00000463301 410 ntBASIC5.57□□□□□ -1.52
PTPN9P43378 LRRC77P-202ENST00000463642 457 ntTSL 4 BASIC5.57□□□□□ -1.52
PTPN9P43378 NPM1P29-201ENST00000483112 803 ntBASIC5.57□□□□□ -1.52
PTPN9P43378 RPL15P21-201ENST00000495592 567 ntBASIC5.57□□□□□ -1.52
PTPN9P43378 GYPA-203ENST00000503627 318 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
PTPN9P43378 EPPIN-WFDC6-201ENST00000504988 1156 ntAPPRIS P1 TSL 2 BASIC5.57□□□□□ -1.52
PTPN9P43378 AC034244.2-201ENST00000514668 858 ntBASIC5.57□□□□□ -1.52
PTPN9P43378 AC112198.4-201ENST00000515450 351 ntBASIC5.57□□□□□ -1.52
PTPN9P43378 SKP1-208ENST00000521216 899 ntAPPRIS ALT1 TSL 5 BASIC5.57□□□□□ -1.52
PTPN9P43378 AC113386.1-201ENST00000523584 381 ntTSL 5 BASIC5.57□□□□□ -1.52
PTPN9P43378 AC068672.3-201ENST00000524017 824 ntTSL 3 BASIC5.57□□□□□ -1.52
PTPN9P43378 OR7G1-201ENST00000541538 936 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
PTPN9P43378 AP002383.3-201ENST00000545958 593 ntTSL 4 BASIC5.57□□□□□ -1.52
PTPN9P43378 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC5.57□□□□□ -1.52
PTPN9P43378 AC131532.1-201ENST00000555596 519 ntTSL 4 BASIC5.57□□□□□ -1.52
PTPN9P43378 ZFAND6-208ENST00000558688 780 ntTSL 2 BASIC5.57□□□□□ -1.52
PTPN9P43378 LINC01243-201ENST00000562065 721 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
PTPN9P43378 AC018557.2-201ENST00000565082 536 ntTSL 5 BASIC5.57□□□□□ -1.52
PTPN9P43378 RN7SL290P-201ENST00000578661 300 ntBASIC5.57□□□□□ -1.52
PTPN9P43378 GTSCR1-201ENST00000582578 470 ntTSL 3 BASIC5.57□□□□□ -1.52
PTPN9P43378 AC005252.1-201ENST00000604518 1063 ntBASIC5.57□□□□□ -1.52
PTPN9P43378 AC067838.1-201ENST00000606064 577 ntBASIC5.57□□□□□ -1.52
PTPN9P43378 AC005156.1-201ENST00000613371 573 ntBASIC5.57□□□□□ -1.52
PTPN9P43378 AC009093.5-201ENST00000620963 359 ntTSL 2 BASIC5.57□□□□□ -1.52
PTPN9P43378 CASC15-208ENST00000636388 1174 ntTSL 5 BASIC5.57□□□□□ -1.52
PTPN9P43378 GART-205ENST00000381839 3469 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
PTPN9P43378 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
PTPN9P43378 TCP11-207ENST00000418521 1575 ntAPPRIS ALT2 TSL 5 BASIC5.57□□□□□ -1.52
PTPN9P43378 AC019072.1-201ENST00000604535 1551 ntBASIC5.57□□□□□ -1.52
PTPN9P43378 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
PTPN9P43378 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
PTPN9P43378 HMMR-202ENST00000358715 2988 ntAPPRIS P4 TSL 1 (best) BASIC5.57□□□□□ -1.52
PTPN9P43378 AC008505.1-203ENST00000637345 1766 ntTSL 5 BASIC5.57□□□□□ -1.52
PTPN9P43378 NPIPB9-201ENST00000357796 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
PTPN9P43378 DYRK1A-202ENST00000339659 8654 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
PTPN9P43378 SMC2-202ENST00000374787 4266 ntAPPRIS P1 TSL 2 BASIC5.57□□□□□ -1.52
PTPN9P43378 ZNF181-203ENST00000459757 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
PTPN9P43378 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC5.56□□□□□ -1.52
PTPN9P43378 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
PTPN9P43378 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
PTPN9P43378 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
PTPN9P43378 RNA5SP183-201ENST00000362452 119 ntBASIC5.56□□□□□ -1.52
PTPN9P43378 RNU1-146P-201ENST00000364015 165 ntBASIC5.56□□□□□ -1.52
PTPN9P43378 RN7SKP153-201ENST00000365026 316 ntBASIC5.56□□□□□ -1.52
PTPN9P43378 SNORA5.1-201ENST00000384275 131 ntBASIC5.56□□□□□ -1.52
PTPN9P43378 RNU1-77P-201ENST00000390868 162 ntBASIC5.56□□□□□ -1.52
PTPN9P43378 U3.25-201ENST00000391209 220 ntBASIC5.56□□□□□ -1.52
PTPN9P43378 OR3A2-201ENST00000408891 1076 ntBASIC5.56□□□□□ -1.52
PTPN9P43378 AL360093.1-201ENST00000420237 1126 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
PTPN9P43378 AL133325.1-201ENST00000421090 382 ntBASIC5.56□□□□□ -1.52
PTPN9P43378 FOCAD-AS1-201ENST00000439876 359 ntTSL 2 BASIC5.56□□□□□ -1.52
PTPN9P43378 RPL5P25-201ENST00000441148 775 ntBASIC5.56□□□□□ -1.52
PTPN9P43378 RPS11P7-201ENST00000442125 465 ntBASIC5.56□□□□□ -1.52
PTPN9P43378 AL442224.1-201ENST00000443771 391 ntTSL 2 BASIC5.56□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 112.8 ms