Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC4.97□□□□□ -1.61
SHMT2P34897 SCN1A-218ENST00000640036 8131 ntAPPRIS ALT1 TSL 5 BASIC4.97□□□□□ -1.61
SHMT2P34897 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC4.97□□□□□ -1.61
SHMT2P34897 TOPORSLP1-201ENST00000467693 2102 ntBASIC4.97□□□□□ -1.61
SHMT2P34897 AP001642.1-201ENST00000624727 2117 ntBASIC4.97□□□□□ -1.61
SHMT2P34897 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC4.97□□□□□ -1.61
SHMT2P34897 OPRM1-215ENST00000520708 1519 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
SHMT2P34897 MOCS2-203ENST00000450852 1337 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
SHMT2P34897 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC4.96□□□□□ -1.61
SHMT2P34897 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC4.96□□□□□ -1.61
SHMT2P34897 AC011912.1-201ENST00000623483 5819 ntTSL 1 (best) BASIC4.96□□□□□ -1.61
SHMT2P34897 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC4.96□□□□□ -1.61
SHMT2P34897 TTC39DP-201ENST00000416781 1688 ntBASIC4.96□□□□□ -1.61
SHMT2P34897 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC4.96□□□□□ -1.61
SHMT2P34897 AC008079.2-201ENST00000623543 20396 ntBASIC4.96□□□□□ -1.61
SHMT2P34897 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC4.96□□□□□ -1.62
SHMT2P34897 STX3-208ENST00000641815 3236 ntBASIC4.96□□□□□ -1.62
SHMT2P34897 EEF1A1P36-201ENST00000427807 1351 ntBASIC4.96□□□□□ -1.62
SHMT2P34897 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC4.96□□□□□ -1.62
SHMT2P34897 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
SHMT2P34897 LINC00314-201ENST00000324988 607 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
SHMT2P34897 RNU6-249P-201ENST00000363016 102 ntBASIC4.96□□□□□ -1.62
SHMT2P34897 AC002524.1-201ENST00000411687 547 ntBASIC4.96□□□□□ -1.62
SHMT2P34897 LINC02528-201ENST00000417800 381 ntTSL 2 BASIC4.96□□□□□ -1.62
SHMT2P34897 AC096711.3-201ENST00000420721 582 ntTSL 4 BASIC4.96□□□□□ -1.62
SHMT2P34897 OR6C71P-201ENST00000432580 913 ntBASIC4.96□□□□□ -1.62
SHMT2P34897 AC046176.1-201ENST00000435260 1170 ntBASIC4.96□□□□□ -1.62
SHMT2P34897 AC092647.3-201ENST00000443044 633 ntBASIC4.96□□□□□ -1.62
SHMT2P34897 AL731574.1-201ENST00000447757 456 ntTSL 5 BASIC4.96□□□□□ -1.62
SHMT2P34897 NDUFA5P8-201ENST00000449019 346 ntBASIC4.96□□□□□ -1.62
SHMT2P34897 AL035409.1-201ENST00000454305 497 ntTSL 2 BASIC4.96□□□□□ -1.62
SHMT2P34897 AC108161.1-201ENST00000461060 402 ntBASIC4.96□□□□□ -1.62
SHMT2P34897 AC091180.1-201ENST00000462104 372 ntBASIC4.96□□□□□ -1.62
SHMT2P34897 RN7SL515P-201ENST00000463999 297 ntBASIC4.96□□□□□ -1.62
SHMT2P34897 RPL5P16-201ENST00000471467 790 ntBASIC4.96□□□□□ -1.62
SHMT2P34897 BX284632.1-201ENST00000478218 541 ntBASIC4.96□□□□□ -1.62
SHMT2P34897 AC135999.1-201ENST00000478962 479 ntBASIC4.96□□□□□ -1.62
SHMT2P34897 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC4.96□□□□□ -1.62
SHMT2P34897 AC004980.4-201ENST00000513375 203 ntBASIC4.96□□□□□ -1.62
SHMT2P34897 AC069272.1-201ENST00000514843 680 ntTSL 3 BASIC4.96□□□□□ -1.62
SHMT2P34897 AC090023.2-201ENST00000540875 545 ntTSL 3 BASIC4.96□□□□□ -1.62
SHMT2P34897 AC051619.2-201ENST00000559063 397 ntBASIC4.96□□□□□ -1.62
SHMT2P34897 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC4.96□□□□□ -1.62
SHMT2P34897 AC107926.1-201ENST00000581673 621 ntTSL 3 BASIC4.96□□□□□ -1.62
SHMT2P34897 AC006504.5-212ENST00000587188 746 ntTSL 3 BASIC4.96□□□□□ -1.62
SHMT2P34897 AC087763.1-201ENST00000603391 286 ntBASIC4.96□□□□□ -1.62
SHMT2P34897 MILR1-203ENST00000615220 1196 ntAPPRIS P3 TSL 2 BASIC4.96□□□□□ -1.62
SHMT2P34897 MIR7155-201ENST00000615925 56 ntBASIC4.96□□□□□ -1.62
SHMT2P34897 AC068870.2-201ENST00000620635 389 ntBASIC4.96□□□□□ -1.62
SHMT2P34897 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC4.96□□□□□ -1.62
SHMT2P34897 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC4.96□□□□□ -1.62
SHMT2P34897 CREM-202ENST00000342105 1541 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
SHMT2P34897 SAMMSON-213ENST00000641336 1521 ntBASIC4.96□□□□□ -1.62
SHMT2P34897 LINC02302-201ENST00000556405 2904 ntTSL 2 BASIC4.96□□□□□ -1.62
SHMT2P34897 HTR1F-201ENST00000319595 3140 ntAPPRIS P1 BASIC4.95□□□□□ -1.62
SHMT2P34897 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
SHMT2P34897 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC4.95□□□□□ -1.62
SHMT2P34897 FAS-205ENST00000357339 1044 ntAPPRIS ALT2 TSL 1 (best) BASIC4.95□□□□□ -1.62
SHMT2P34897 SNORA74A-201ENST00000364089 198 ntBASIC4.95□□□□□ -1.62
SHMT2P34897 AL353625.1-202ENST00000366273 571 ntBASIC4.95□□□□□ -1.62
SHMT2P34897 RNF212B-201ENST00000399905 1071 ntTSL 5 BASIC4.95□□□□□ -1.62
SHMT2P34897 AC093162.1-201ENST00000419682 124 ntBASIC4.95□□□□□ -1.62
SHMT2P34897 BRWD1P3-201ENST00000428816 390 ntBASIC4.95□□□□□ -1.62
SHMT2P34897 AL355357.1-201ENST00000433531 417 ntTSL 2 BASIC4.95□□□□□ -1.62
SHMT2P34897 AL139002.1-201ENST00000435281 902 ntTSL 5 BASIC4.95□□□□□ -1.62
SHMT2P34897 PTMAP6-201ENST00000439110 327 ntBASIC4.95□□□□□ -1.62
SHMT2P34897 GTF3AP5-201ENST00000442645 697 ntBASIC4.95□□□□□ -1.62
SHMT2P34897 AL138767.2-201ENST00000446794 168 ntTSL 3 BASIC4.95□□□□□ -1.62
SHMT2P34897 AL034380.1-201ENST00000448791 306 ntTSL 3 BASIC4.95□□□□□ -1.62
SHMT2P34897 AC115618.2-201ENST00000453810 450 ntTSL 3 BASIC4.95□□□□□ -1.62
SHMT2P34897 CLEC2A-202ENST00000455827 916 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
SHMT2P34897 HMGN2P25-201ENST00000486956 268 ntBASIC4.95□□□□□ -1.62
SHMT2P34897 AC132219.1-201ENST00000524337 478 ntTSL 5 BASIC4.95□□□□□ -1.62
SHMT2P34897 AP003557.1-201ENST00000531715 585 ntTSL 3 BASIC4.95□□□□□ -1.62
SHMT2P34897 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC4.95□□□□□ -1.62
SHMT2P34897 AC234775.3-201ENST00000564612 656 ntBASIC4.95□□□□□ -1.62
SHMT2P34897 AC115989.2-201ENST00000578640 563 ntBASIC4.95□□□□□ -1.62
SHMT2P34897 ZNF66-203ENST00000594534 757 ntTSL 5 BASIC4.95□□□□□ -1.62
SHMT2P34897 GMFG-202ENST00000594700 397 ntTSL 2 BASIC4.95□□□□□ -1.62
SHMT2P34897 AP005432.2-201ENST00000608162 586 ntBASIC4.95□□□□□ -1.62
SHMT2P34897 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC4.95□□□□□ -1.62
SHMT2P34897 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC4.95□□□□□ -1.62
SHMT2P34897 AL162425.1-201ENST00000423637 1525 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
SHMT2P34897 RGS4-202ENST00000367908 2606 ntTSL 2 BASIC4.95□□□□□ -1.62
SHMT2P34897 AC087257.1-201ENST00000506925 2639 ntTSL 4 BASIC4.95□□□□□ -1.62
SHMT2P34897 EIF2AK3-203ENST00000419748 4222 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
SHMT2P34897 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC4.95□□□□□ -1.62
SHMT2P34897 AC024337.2-201ENST00000616608 2797 ntTSL 5 BASIC4.95□□□□□ -1.62
SHMT2P34897 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC4.95□□□□□ -1.62
SHMT2P34897 AL731566.1-201ENST00000620490 1937 ntBASIC4.95□□□□□ -1.62
SHMT2P34897 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC4.95□□□□□ -1.62
SHMT2P34897 CLCA3P-201ENST00000284054 2407 ntTSL 5 BASIC4.95□□□□□ -1.62
SHMT2P34897 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC4.95□□□□□ -1.62
SHMT2P34897 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC4.94□□□□□ -1.62
SHMT2P34897 OFD1P9Y-201ENST00000417699 1491 ntBASIC4.94□□□□□ -1.62
SHMT2P34897 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC4.94□□□□□ -1.62
SHMT2P34897 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
SHMT2P34897 EIF1AY-201ENST00000361365 1390 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
SHMT2P34897 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC4.94□□□□□ -1.62
SHMT2P34897 TMBIM4-201ENST00000286424 989 ntTSL 5 BASIC4.94□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 281.5 ms