Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC4.98□□□□□ -1.61
CCDC28BQ9BUN5 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
CCDC28BQ9BUN5 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
CCDC28BQ9BUN5 ABCB5-201ENST00000258738 2906 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
CCDC28BQ9BUN5 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC4.97□□□□□ -1.61
CCDC28BQ9BUN5 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
CCDC28BQ9BUN5 ZNF525-202ENST00000474037 3890 ntAPPRIS P1 TSL 5 BASIC4.97□□□□□ -1.61
CCDC28BQ9BUN5 LINC01109-201ENST00000603837 3081 ntBASIC4.97□□□□□ -1.61
CCDC28BQ9BUN5 NPY6R-202ENST00000510937 2988 ntTSL 3 BASIC4.97□□□□□ -1.61
CCDC28BQ9BUN5 RNF19BPY-201ENST00000458209 1550 ntBASIC4.97□□□□□ -1.61
CCDC28BQ9BUN5 CKS1B-201ENST00000308987 759 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
CCDC28BQ9BUN5 TMEM31-201ENST00000319560 728 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
CCDC28BQ9BUN5 RN7SKP275-201ENST00000364626 301 ntBASIC4.97□□□□□ -1.61
CCDC28BQ9BUN5 MIR137-201ENST00000385223 102 ntBASIC4.97□□□□□ -1.61
CCDC28BQ9BUN5 TOMM7-203ENST00000405021 455 ntTSL 2 BASIC4.97□□□□□ -1.61
CCDC28BQ9BUN5 OR6E1P-201ENST00000414424 923 ntBASIC4.97□□□□□ -1.61
CCDC28BQ9BUN5 AL049712.1-201ENST00000418739 872 ntTSL 3 BASIC4.97□□□□□ -1.61
CCDC28BQ9BUN5 AL391987.2-201ENST00000421848 492 ntTSL 5 BASIC4.97□□□□□ -1.61
CCDC28BQ9BUN5 EIF4EP1-201ENST00000422311 642 ntBASIC4.97□□□□□ -1.61
CCDC28BQ9BUN5 FAM204CP-201ENST00000424489 642 ntBASIC4.97□□□□□ -1.61
CCDC28BQ9BUN5 AC006455.6-201ENST00000426192 893 ntBASIC4.97□□□□□ -1.61
CCDC28BQ9BUN5 LINC01400-201ENST00000426358 947 ntTSL 3 BASIC4.97□□□□□ -1.61
CCDC28BQ9BUN5 DSTNP5-201ENST00000427921 523 ntBASIC4.97□□□□□ -1.61
CCDC28BQ9BUN5 LINC01350-201ENST00000436955 642 ntTSL 3 BASIC4.97□□□□□ -1.61
CCDC28BQ9BUN5 AC092162.2-201ENST00000438143 532 ntTSL 4 BASIC4.97□□□□□ -1.61
CCDC28BQ9BUN5 HLA-DPA3-207ENST00000454398 229 ntBASIC4.97□□□□□ -1.61
CCDC28BQ9BUN5 EGFLAM-AS3-201ENST00000505267 549 ntTSL 5 BASIC4.97□□□□□ -1.61
CCDC28BQ9BUN5 AC110760.1-201ENST00000513770 590 ntTSL 3 BASIC4.97□□□□□ -1.61
CCDC28BQ9BUN5 HMGB1P40-201ENST00000525121 540 ntBASIC4.97□□□□□ -1.61
CCDC28BQ9BUN5 CCDC60-203ENST00000536742 886 ntAPPRIS ALT2 TSL 2 BASIC4.97□□□□□ -1.61
CCDC28BQ9BUN5 LINC00929-203ENST00000556213 713 ntTSL 2 BASIC4.97□□□□□ -1.61
CCDC28BQ9BUN5 AC011468.1-201ENST00000569091 675 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
CCDC28BQ9BUN5 AC079315.1-201ENST00000602952 623 ntBASIC4.97□□□□□ -1.61
CCDC28BQ9BUN5 AC138473.1-201ENST00000605717 526 ntBASIC4.97□□□□□ -1.61
CCDC28BQ9BUN5 AC091979.2-201ENST00000607514 214 ntBASIC4.97□□□□□ -1.61
CCDC28BQ9BUN5 AC012467.1-201ENST00000607740 256 ntBASIC4.97□□□□□ -1.61
CCDC28BQ9BUN5 AC005162.3-202ENST00000609495 483 ntTSL 5 BASIC4.97□□□□□ -1.61
CCDC28BQ9BUN5 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC4.97□□□□□ -1.61
CCDC28BQ9BUN5 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC4.97□□□□□ -1.61
CCDC28BQ9BUN5 FAM49B-230ENST00000639004 837 ntTSL 5 BASIC4.97□□□□□ -1.61
CCDC28BQ9BUN5 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC4.97□□□□□ -1.61
CCDC28BQ9BUN5 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
CCDC28BQ9BUN5 C2CD6-201ENST00000286195 2104 ntAPPRIS P3 TSL 1 (best) BASIC4.97□□□□□ -1.61
CCDC28BQ9BUN5 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
CCDC28BQ9BUN5 AL355306.2-205ENST00000635395 1646 ntTSL 5 BASIC4.97□□□□□ -1.61
CCDC28BQ9BUN5 LGALS8-222ENST00000527974 1349 ntAPPRIS P4 TSL 5 BASIC4.97□□□□□ -1.61
CCDC28BQ9BUN5 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
CCDC28BQ9BUN5 TLK1P1-201ENST00000456760 2440 ntBASIC4.96□□□□□ -1.61
CCDC28BQ9BUN5 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC4.96□□□□□ -1.61
CCDC28BQ9BUN5 AC091046.3-201ENST00000631455 1574 ntBASIC4.96□□□□□ -1.62
CCDC28BQ9BUN5 HYKK-206ENST00000569878 4097 ntAPPRIS P1 TSL 5 BASIC4.96□□□□□ -1.62
CCDC28BQ9BUN5 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
CCDC28BQ9BUN5 TRIM77-201ENST00000398290 1353 ntAPPRIS P1 TSL 5 BASIC4.96□□□□□ -1.62
CCDC28BQ9BUN5 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
CCDC28BQ9BUN5 LINC02261-201ENST00000512873 2802 ntTSL 2 BASIC4.96□□□□□ -1.62
CCDC28BQ9BUN5 RNU4-23P-201ENST00000362839 140 ntBASIC4.96□□□□□ -1.62
CCDC28BQ9BUN5 G6PC2-202ENST00000375363 1214 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
CCDC28BQ9BUN5 OR2W1-201ENST00000377175 1028 ntAPPRIS P1 BASIC4.96□□□□□ -1.62
CCDC28BQ9BUN5 TRGV10-201ENST00000390341 512 ntAPPRIS P1 BASIC4.96□□□□□ -1.62
CCDC28BQ9BUN5 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC4.96□□□□□ -1.62
CCDC28BQ9BUN5 EFCAB9-201ENST00000398186 702 ntAPPRIS P1 TSL 3 BASIC4.96□□□□□ -1.62
CCDC28BQ9BUN5 AL049812.3-201ENST00000412348 417 ntTSL 3 BASIC4.96□□□□□ -1.62
CCDC28BQ9BUN5 GABARAPL3-201ENST00000412799 354 ntBASIC4.96□□□□□ -1.62
CCDC28BQ9BUN5 PLCE1-AS2-201ENST00000419353 459 ntTSL 5 BASIC4.96□□□□□ -1.62
CCDC28BQ9BUN5 TNPO1P1-201ENST00000423641 1138 ntBASIC4.96□□□□□ -1.62
CCDC28BQ9BUN5 RPS29P10-201ENST00000439197 166 ntBASIC4.96□□□□□ -1.62
CCDC28BQ9BUN5 AC006019.3-201ENST00000446335 698 ntTSL 3 BASIC4.96□□□□□ -1.62
CCDC28BQ9BUN5 AL591363.1-201ENST00000450091 483 ntBASIC4.96□□□□□ -1.62
CCDC28BQ9BUN5 LINC01911-201ENST00000450667 806 ntTSL 5 BASIC4.96□□□□□ -1.62
CCDC28BQ9BUN5 AC115618.2-201ENST00000453810 450 ntTSL 3 BASIC4.96□□□□□ -1.62
CCDC28BQ9BUN5 AC034195.1-203ENST00000455703 728 ntTSL 2 BASIC4.96□□□□□ -1.62
CCDC28BQ9BUN5 CLEC2A-202ENST00000455827 916 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
CCDC28BQ9BUN5 OR2A1-AS1-202ENST00000467944 422 ntBASIC4.96□□□□□ -1.62
CCDC28BQ9BUN5 RPL7AP10-201ENST00000481016 791 ntBASIC4.96□□□□□ -1.62
CCDC28BQ9BUN5 AC092666.1-203ENST00000495144 698 ntTSL 5 BASIC4.96□□□□□ -1.62
CCDC28BQ9BUN5 AC008592.2-201ENST00000506070 571 ntTSL 3 BASIC4.96□□□□□ -1.62
CCDC28BQ9BUN5 AC097491.1-201ENST00000507857 672 ntTSL 5 BASIC4.96□□□□□ -1.62
CCDC28BQ9BUN5 AC012400.1-201ENST00000518452 381 ntBASIC4.96□□□□□ -1.62
CCDC28BQ9BUN5 AC011853.1-201ENST00000518911 454 ntBASIC4.96□□□□□ -1.62
CCDC28BQ9BUN5 AC079089.1-204ENST00000530194 572 ntTSL 2 BASIC4.96□□□□□ -1.62
CCDC28BQ9BUN5 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC4.96□□□□□ -1.62
CCDC28BQ9BUN5 CPSF7-220ENST00000541963 549 ntTSL 4 BASIC4.96□□□□□ -1.62
CCDC28BQ9BUN5 AC073569.1-201ENST00000548469 667 ntTSL 2 BASIC4.96□□□□□ -1.62
CCDC28BQ9BUN5 AL049830.4-201ENST00000555149 351 ntBASIC4.96□□□□□ -1.62
CCDC28BQ9BUN5 AC107958.1-201ENST00000556576 290 ntBASIC4.96□□□□□ -1.62
CCDC28BQ9BUN5 RPL21P7-201ENST00000557463 483 ntBASIC4.96□□□□□ -1.62
CCDC28BQ9BUN5 LINC02259-202ENST00000565543 438 ntTSL 2 BASIC4.96□□□□□ -1.62
CCDC28BQ9BUN5 AC015720.2-201ENST00000567709 334 ntBASIC4.96□□□□□ -1.62
CCDC28BQ9BUN5 AC007639.1-201ENST00000577281 833 ntTSL 3 BASIC4.96□□□□□ -1.62
CCDC28BQ9BUN5 AC245128.3-201ENST00000594721 748 ntBASIC4.96□□□□□ -1.62
CCDC28BQ9BUN5 CT45A3-202ENST00000598716 855 ntAPPRIS P1 TSL 3 BASIC4.96□□□□□ -1.62
CCDC28BQ9BUN5 AC087468.1-201ENST00000604365 630 ntBASIC4.96□□□□□ -1.62
CCDC28BQ9BUN5 SAMD9L-209ENST00000610760 1221 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
CCDC28BQ9BUN5 AL391597.1-201ENST00000618707 694 ntBASIC4.96□□□□□ -1.62
CCDC28BQ9BUN5 AC073592.6-201ENST00000624271 415 ntBASIC4.96□□□□□ -1.62
CCDC28BQ9BUN5 CFTRP2-201ENST00000634304 199 ntBASIC4.96□□□□□ -1.62
CCDC28BQ9BUN5 AC063952.1-204ENST00000635496 927 ntTSL 5 BASIC4.96□□□□□ -1.62
CCDC28BQ9BUN5 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC4.96□□□□□ -1.62
CCDC28BQ9BUN5 C4orf17-201ENST00000326581 1636 ntAPPRIS P2 TSL 1 (best) BASIC4.96□□□□□ -1.62
CCDC28BQ9BUN5 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC4.96□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 88.3 ms