Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 LINC02421-201ENST00000542219 3135 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
PTCHD3Q3KNS1 RFX3-204ENST00000382004 9307 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
PTCHD3Q3KNS1 ARHGAP20-204ENST00000528829 5880 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.51
PTCHD3Q3KNS1 KIAA1841-205ENST00000453873 4294 ntAPPRIS P1 TSL 5 BASIC5.62□□□□□ -1.51
PTCHD3Q3KNS1 PAK3-201ENST00000262836 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC5.62□□□□□ -1.51
PTCHD3Q3KNS1 PAK3-205ENST00000417227 2196 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
PTCHD3Q3KNS1 MCM10-202ENST00000378714 4547 ntAPPRIS ALT2 TSL 1 (best) BASIC5.62□□□□□ -1.51
PTCHD3Q3KNS1 AC232271.1-201ENST00000602455 2715 ntBASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 PPFIBP1-201ENST00000228425 5933 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 AC008695.1-201ENST00000514667 6393 ntAPPRIS P1 TSL 2 BASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 PLCH1-202ENST00000340059 6168 ntAPPRIS ALT2 TSL 1 (best) BASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 GTDC1-201ENST00000241391 2356 ntTSL 2 BASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 SCGB3A2-201ENST00000296694 515 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 SLC16A6-201ENST00000327268 3807 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 KRTAP23-1-201ENST00000334160 211 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 MIR323A-201ENST00000362199 86 ntBASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 U3.10-201ENST00000364459 214 ntBASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 MOSPD2-201ENST00000380492 4163 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 U6.112-201ENST00000384129 70 ntBASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 MT-TP-201ENST00000387461 68 ntBASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 MEPE-202ENST00000395102 2123 ntAPPRIS ALT2 TSL 5 BASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 AC005522.1-201ENST00000395416 346 ntBASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 CEACAM7-202ENST00000401731 1236 ntAPPRIS P1 TSL 2 BASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 RPL7P27-201ENST00000403775 720 ntBASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 TOX3-202ENST00000407228 3124 ntAPPRIS ALT2 TSL 2 BASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 RN7SKP279-201ENST00000411383 298 ntBASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 TRIM60P5Y-201ENST00000413946 574 ntBASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 MRPL53P1-201ENST00000414323 319 ntBASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 RPL22P18-201ENST00000417197 377 ntBASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 AC011752.1-203ENST00000417609 582 ntTSL 2 BASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 AC023128.2-201ENST00000420880 1223 ntBASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 AL158817.1-201ENST00000422310 933 ntTSL 3 BASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 VN1R21P-201ENST00000426703 765 ntBASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 LINC01222-201ENST00000427439 1785 ntTSL 2 BASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 AC242426.1-201ENST00000435270 960 ntBASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 GAPDHP48-201ENST00000436626 961 ntBASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 LINC02094-201ENST00000437646 520 ntTSL 2 BASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 CR769776.1-201ENST00000441254 787 ntBASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 AC064862.4-201ENST00000442180 334 ntBASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 CASP12-206ENST00000446862 1196 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 SEPT14P24-201ENST00000447236 180 ntBASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 DOCK4-AS1-201ENST00000452714 2494 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 OFD1P7Y-201ENST00000454643 1155 ntBASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 ATP5J-207ENST00000457143 589 ntTSL 2 BASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 ST20-201ENST00000478497 1004 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 EFCAB10-203ENST00000480514 740 ntAPPRIS ALT1 TSL 1 (best) BASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 RN7SL273P-201ENST00000481561 299 ntBASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 PHC3-208ENST00000481639 1075 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 AC010273.1-201ENST00000504129 946 ntTSL 5 BASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 SCGB3A2-202ENST00000504320 440 ntTSL 3 BASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 AC117383.1-201ENST00000507698 422 ntTSL 3 BASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 AC113420.1-201ENST00000507903 571 ntBASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 VNN3-211ENST00000509351 1700 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 LINC00977-201ENST00000509893 1163 ntTSL 2 BASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 SNORA70.20-201ENST00000516848 126 ntBASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 LINC02143-201ENST00000519929 520 ntTSL 3 BASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 AC099520.2-201ENST00000523745 567 ntTSL 3 BASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 CASP1-206ENST00000526568 1061 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 UBTFL10-201ENST00000528532 562 ntBASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 CASP1-216ENST00000534497 825 ntTSL 5 BASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 AAGAB-203ENST00000542650 1015 ntTSL 2 BASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 AC011611.5-201ENST00000552477 578 ntBASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 AL163195.3-202ENST00000555283 578 ntAPPRIS P1 TSL 4 BASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 AL356022.1-202ENST00000555433 379 ntTSL 2 BASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 AC016987.1-201ENST00000558587 499 ntTSL 2 BASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 AC009113.2-201ENST00000563182 403 ntTSL 3 BASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 AC099786.3-201ENST00000565735 1410 ntBASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 AC136944.1-201ENST00000567464 560 ntTSL 5 BASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 ZNF227-208ENST00000589005 2943 ntTSL 2 BASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 AC011990.1-201ENST00000592809 734 ntTSL 3 BASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 AC018618.2-201ENST00000604770 446 ntBASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 AC024060.1-201ENST00000607052 494 ntBASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 OR2BH1P-201ENST00000608850 864 ntBASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 AC093388.1-201ENST00000609166 430 ntBASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 PART1_2.1-201ENST00000612397 250 ntBASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 AC006386.1-201ENST00000619436 415 ntBASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 AL442128.2-201ENST00000620246 1824 ntBASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 ADAM2-207ENST00000622267 2480 ntAPPRIS ALT2 TSL 2 BASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 AJ009632.2-207ENST00000634659 527 ntTSL 5 BASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 AC012564.1-201ENST00000636802 557 ntTSL 4 BASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 SLC35A5-206ENST00000492406 4399 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 AC003973.3-201ENST00000624863 2822 ntBASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 OR7C1-204ENST00000642000 11290 ntAPPRIS P1 BASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 WDPCP-203ENST00000409120 5408 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
PTCHD3Q3KNS1 AC138907.8-201ENST00000623981 2256 ntBASIC5.6□□□□□ -1.51
PTCHD3Q3KNS1 CASC19-260ENST00000641828 2001 ntBASIC5.6□□□□□ -1.51
PTCHD3Q3KNS1 AL355306.2-206ENST00000635233 1903 ntTSL 5 BASIC5.6□□□□□ -1.51
PTCHD3Q3KNS1 SLC1A3-215ENST00000612708 3832 ntTSL 5 BASIC5.6□□□□□ -1.51
PTCHD3Q3KNS1 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC5.6□□□□□ -1.51
PTCHD3Q3KNS1 NLRP3P1-201ENST00000622303 1785 ntBASIC5.6□□□□□ -1.51
PTCHD3Q3KNS1 PI15-202ENST00000523773 1413 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
PTCHD3Q3KNS1 ESRRG-224ENST00000616180 5194 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
PTCHD3Q3KNS1 RPL39P5-201ENST00000273411 449 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
PTCHD3Q3KNS1 GLIPR1L1-201ENST00000312442 1132 ntAPPRIS P3 TSL 1 (best) BASIC5.6□□□□□ -1.51
PTCHD3Q3KNS1 OR9A2-201ENST00000350513 1038 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
PTCHD3Q3KNS1 MIR375-201ENST00000362103 64 ntBASIC5.6□□□□□ -1.51
PTCHD3Q3KNS1 RNU4-7P-201ENST00000364758 141 ntBASIC5.6□□□□□ -1.51
PTCHD3Q3KNS1 SPINK9-201ENST00000377906 453 ntAPPRIS P2 TSL 1 (best) BASIC5.6□□□□□ -1.51
PTCHD3Q3KNS1 RNY3P9-201ENST00000384727 106 ntBASIC5.6□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 95.5 ms