Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AL670379.9-201ENST00000605428 253 ntBASIC7.94□□□□□ -1.14
COL9A1P20849 DRICH1-202ENST00000614553 687 ntAPPRIS P1 TSL 1 (best) BASIC7.94□□□□□ -1.14
COL9A1P20849 AC141273.2-201ENST00000618989 130 ntBASIC7.94□□□□□ -1.14
COL9A1P20849 MIR6886-201ENST00000619864 61 ntBASIC7.94□□□□□ -1.14
COL9A1P20849 PCBP1-AS1-286ENST00000625888 765 ntTSL 5 BASIC7.94□□□□□ -1.14
COL9A1P20849 DARS-AS1-227ENST00000627442 633 ntTSL 5 BASIC7.94□□□□□ -1.14
COL9A1P20849 SEC61A2-202ENST00000304267 2030 ntTSL 2 BASIC7.94□□□□□ -1.14
COL9A1P20849 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC7.94□□□□□ -1.14
COL9A1P20849 ZNF268-206ENST00000536899 3236 ntTSL 1 (best) BASIC7.94□□□□□ -1.14
COL9A1P20849 DNAH11-201ENST00000328843 13917 ntAPPRIS ALT2 TSL 5 BASIC7.94□□□□□ -1.14
COL9A1P20849 MTND5P30-201ENST00000452896 1731 ntBASIC7.94□□□□□ -1.14
COL9A1P20849 AC008627.1-201ENST00000517511 1704 ntBASIC7.94□□□□□ -1.14
COL9A1P20849 LINC01695-203ENST00000453420 4486 ntTSL 1 (best) BASIC7.94□□□□□ -1.14
COL9A1P20849 SNX25-202ENST00000504273 3323 ntAPPRIS P1 TSL 1 (best) BASIC7.94□□□□□ -1.14
COL9A1P20849 RGS21-201ENST00000417209 1794 ntAPPRIS P1 TSL 1 (best) BASIC7.94□□□□□ -1.14
COL9A1P20849 POLR1B-204ENST00000417433 3836 ntTSL 2 BASIC7.94□□□□□ -1.14
COL9A1P20849 TRIM6-212ENST00000621176 3005 ntTSL 5 BASIC7.94□□□□□ -1.14
COL9A1P20849 CSMD1-218ENST00000635120 11737 ntAPPRIS P2 TSL 5 BASIC7.93□□□□□ -1.14
COL9A1P20849 OR51E2-201ENST00000396950 2781 ntAPPRIS P1 BASIC7.93□□□□□ -1.14
COL9A1P20849 TNIK-201ENST00000284483 4059 ntAPPRIS ALT2 TSL 1 (best) BASIC7.93□□□□□ -1.14
COL9A1P20849 KIF20A-201ENST00000394894 3201 ntAPPRIS P1 TSL 1 (best) BASIC7.93□□□□□ -1.14
COL9A1P20849 AC009090.4-201ENST00000623921 3691 ntBASIC7.93□□□□□ -1.14
COL9A1P20849 GMFB-209ENST00000616146 4125 ntAPPRIS P1 TSL 5 BASIC7.93□□□□□ -1.14
COL9A1P20849 PSD3-203ENST00000428502 6330 ntTSL 1 (best) BASIC7.93□□□□□ -1.14
COL9A1P20849 FAM47C-201ENST00000358047 3270 ntAPPRIS P1 BASIC7.93□□□□□ -1.14
COL9A1P20849 LY9-203ENST00000368037 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC7.93□□□□□ -1.14
COL9A1P20849 CD86-209ENST00000493101 1572 ntTSL 2 BASIC7.93□□□□□ -1.14
COL9A1P20849 EIF3F-208ENST00000533626 7540 ntAPPRIS P1 TSL 2 BASIC7.93□□□□□ -1.14
COL9A1P20849 ZNF680-201ENST00000309683 3022 ntAPPRIS P1 TSL 1 (best) BASIC7.93□□□□□ -1.14
COL9A1P20849 EGFLAM-201ENST00000322350 4411 ntAPPRIS P3 TSL 1 (best) BASIC7.93□□□□□ -1.14
COL9A1P20849 PTBP3-205ENST00000374257 7240 ntAPPRIS ALT1 TSL 2 BASIC7.93□□□□□ -1.14
COL9A1P20849 GABRA3-204ENST00000535043 1697 ntAPPRIS P1 TSL 1 (best) BASIC7.93□□□□□ -1.14
COL9A1P20849 BHLHB9-205ENST00000457056 4082 ntAPPRIS P1 TSL 4 BASIC7.93□□□□□ -1.14
COL9A1P20849 NCEH1-206ENST00000543711 4062 ntTSL 2 BASIC7.93□□□□□ -1.14
COL9A1P20849 DROSHA-220ENST00000513349 4681 ntAPPRIS ALT2 TSL 1 (best) BASIC7.93□□□□□ -1.14
COL9A1P20849 MS4A6A-203ENST00000426738 1736 ntTSL 5 BASIC7.93□□□□□ -1.14
COL9A1P20849 USP40-203ENST00000427112 3744 ntAPPRIS ALT2 TSL 1 (best) BASIC7.93□□□□□ -1.14
COL9A1P20849 KCNMB2-201ENST00000358316 2271 ntAPPRIS P1 TSL 1 (best) BASIC7.93□□□□□ -1.14
COL9A1P20849 PPIP5K2-202ENST00000358359 5813 ntAPPRIS ALT2 TSL 1 (best) BASIC7.93□□□□□ -1.14
COL9A1P20849 RNA5SP443-201ENST00000363083 132 ntBASIC7.93□□□□□ -1.14
COL9A1P20849 Y_RNA.153-201ENST00000363615 91 ntBASIC7.93□□□□□ -1.14
COL9A1P20849 TYRP1-201ENST00000381136 872 ntTSL 2 BASIC7.93□□□□□ -1.14
COL9A1P20849 RNU6-1040P-201ENST00000383974 107 ntBASIC7.93□□□□□ -1.14
COL9A1P20849 MIR1-2-201ENST00000384961 85 ntBASIC7.93□□□□□ -1.14
COL9A1P20849 SNORD94-201ENST00000386037 137 ntBASIC7.93□□□□□ -1.14
COL9A1P20849 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC7.93□□□□□ -1.14
COL9A1P20849 LINC01589-201ENST00000422971 548 ntTSL 1 (best) BASIC7.93□□□□□ -1.14
COL9A1P20849 PMCHL1-204ENST00000430902 659 ntTSL 1 (best) BASIC7.93□□□□□ -1.14
COL9A1P20849 ZDHHC20P1-204ENST00000435787 423 ntBASIC7.93□□□□□ -1.14
COL9A1P20849 RPS3AP38-201ENST00000435889 763 ntBASIC7.93□□□□□ -1.14
COL9A1P20849 GCNT1P5-201ENST00000449274 682 ntBASIC7.93□□□□□ -1.14
COL9A1P20849 PSMC1P13-201ENST00000458195 985 ntBASIC7.93□□□□□ -1.14
COL9A1P20849 RN7SL325P-201ENST00000460434 283 ntBASIC7.93□□□□□ -1.14
COL9A1P20849 AC092324.1-201ENST00000468671 324 ntBASIC7.93□□□□□ -1.14
COL9A1P20849 RN7SL36P-201ENST00000469345 276 ntBASIC7.93□□□□□ -1.14
COL9A1P20849 AC126389.1-201ENST00000477436 290 ntBASIC7.93□□□□□ -1.14
COL9A1P20849 RPS4XP18-201ENST00000495480 763 ntBASIC7.93□□□□□ -1.14
COL9A1P20849 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC7.93□□□□□ -1.14
COL9A1P20849 AC104109.1-201ENST00000498563 436 ntBASIC7.93□□□□□ -1.14
COL9A1P20849 AC094108.1-201ENST00000502494 527 ntTSL 3 BASIC7.93□□□□□ -1.14
COL9A1P20849 AC009567.2-201ENST00000502989 349 ntBASIC7.93□□□□□ -1.14
COL9A1P20849 AC092903.2-201ENST00000510244 427 ntTSL 5 BASIC7.93□□□□□ -1.14
COL9A1P20849 AC069113.2-201ENST00000517735 359 ntTSL 3 BASIC7.93□□□□□ -1.14
COL9A1P20849 AC111149.1-201ENST00000522560 343 ntTSL 3 BASIC7.93□□□□□ -1.14
COL9A1P20849 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC7.93□□□□□ -1.14
COL9A1P20849 UBE2Q2P11-201ENST00000559691 205 ntBASIC7.93□□□□□ -1.14
COL9A1P20849 DNM1P31-201ENST00000564149 696 ntBASIC7.93□□□□□ -1.14
COL9A1P20849 ULK4P1-202ENST00000565174 503 ntBASIC7.93□□□□□ -1.14
COL9A1P20849 AL390718.1-201ENST00000566904 506 ntTSL 3 BASIC7.93□□□□□ -1.14
COL9A1P20849 AC113195.1-201ENST00000579952 141 ntBASIC7.93□□□□□ -1.14
COL9A1P20849 AC098848.2-201ENST00000588023 330 ntBASIC7.93□□□□□ -1.14
COL9A1P20849 RPL27-205ENST00000589037 585 ntAPPRIS P1 TSL 3 BASIC7.93□□□□□ -1.14
COL9A1P20849 LINC01515-204ENST00000595269 402 ntTSL 5 BASIC7.93□□□□□ -1.14
COL9A1P20849 LINC01125-220ENST00000599501 965 ntAPPRIS ALT2 TSL 5 BASIC7.93□□□□□ -1.14
COL9A1P20849 AC140658.6-201ENST00000603958 201 ntBASIC7.93□□□□□ -1.14
COL9A1P20849 ESRRAP2-204ENST00000606337 280 ntTSL 5 BASIC7.93□□□□□ -1.14
COL9A1P20849 AC005303.1-201ENST00000607906 740 ntTSL 5 BASIC7.93□□□□□ -1.14
COL9A1P20849 AP001521.1-201ENST00000609150 300 ntBASIC7.93□□□□□ -1.14
COL9A1P20849 AC073488.7-201ENST00000633785 778 ntBASIC7.93□□□□□ -1.14
COL9A1P20849 FAM13C-215ENST00000614220 3388 ntAPPRIS ALT2 TSL 5 BASIC7.93□□□□□ -1.14
COL9A1P20849 ZFP30-204ENST00000514101 4440 ntAPPRIS P1 TSL 1 (best) BASIC7.93□□□□□ -1.14
COL9A1P20849 AZIN1-202ENST00000347770 2857 ntAPPRIS P1 TSL 1 (best) BASIC7.93□□□□□ -1.14
COL9A1P20849 RAD54L2-201ENST00000409535 9776 ntAPPRIS P1 TSL 5 BASIC7.93□□□□□ -1.14
COL9A1P20849 AC097504.1-201ENST00000515103 2415 ntBASIC7.93□□□□□ -1.14
COL9A1P20849 ZNF415-203ENST00000500065 2496 ntAPPRIS ALT2 TSL 4 BASIC7.93□□□□□ -1.14
COL9A1P20849 HIP1-201ENST00000336926 8013 ntAPPRIS P1 TSL 1 (best) BASIC7.93□□□□□ -1.14
COL9A1P20849 TTLL4-201ENST00000258398 4730 ntAPPRIS P1 TSL 2 BASIC7.93□□□□□ -1.14
COL9A1P20849 FGD6-201ENST00000343958 9288 ntAPPRIS P1 TSL 1 (best) BASIC7.93□□□□□ -1.14
COL9A1P20849 WDR87-201ENST00000303868 8847 ntAPPRIS P3 TSL 2 BASIC7.93□□□□□ -1.14
COL9A1P20849 SYNPO2-204ENST00000448416 4298 ntTSL 2 BASIC7.93□□□□□ -1.14
COL9A1P20849 ALB-219ENST00000621085 1418 ntTSL 5 BASIC7.93□□□□□ -1.14
COL9A1P20849 AP005060.1-201ENST00000623868 3174 ntBASIC7.93□□□□□ -1.14
COL9A1P20849 SIRT5-201ENST00000359782 3797 ntTSL 2 BASIC7.93□□□□□ -1.14
COL9A1P20849 FPR3-202ENST00000595991 2222 ntAPPRIS P1 TSL 4 BASIC7.93□□□□□ -1.14
COL9A1P20849 DLG2-230ENST00000532653 2891 ntAPPRIS ALT2 TSL 1 (best) BASIC7.92□□□□□ -1.14
COL9A1P20849 ZNF383-208ENST00000590503 1673 ntAPPRIS P1 TSL 5 BASIC7.92□□□□□ -1.14
COL9A1P20849 PARP1P1-201ENST00000413631 3026 ntBASIC7.92□□□□□ -1.14
COL9A1P20849 TMOD2-203ENST00000539962 3000 ntTSL 2 BASIC7.92□□□□□ -1.14
COL9A1P20849 RBMXL1-202ENST00000399794 5084 ntAPPRIS P1 TSL 2 BASIC7.92□□□□□ -1.14
COL9A1P20849 ZNF252P-201ENST00000426361 5210 ntTSL 4 BASIC7.92□□□□□ -1.14
Retrieved 100 of 98,524 protein–RNA pairs in 85.8 ms