Protein–RNA interactions for Protein: Q9NUG4

CCM2L, Cerebral cavernous malformations 2 protein-like, humanhuman

Predicted RBP Predictions only

Length 571 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2LQ9NUG4 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCM2LQ9NUG4 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCM2LQ9NUG4 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCM2LQ9NUG4 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCM2LQ9NUG4 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC18.57■□□□□ 0.56
CCM2LQ9NUG4 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CCM2LQ9NUG4 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCM2LQ9NUG4 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CCM2LQ9NUG4 SAPCD2P1-201ENST00000395413 1184 ntBASIC18.57■□□□□ 0.56
CCM2LQ9NUG4 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC18.57■□□□□ 0.56
CCM2LQ9NUG4 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCM2LQ9NUG4 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCM2LQ9NUG4 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC18.57■□□□□ 0.56
CCM2LQ9NUG4 DUX4L16-201ENST00000555130 1264 ntBASIC18.57■□□□□ 0.56
CCM2LQ9NUG4 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC18.57■□□□□ 0.56
CCM2LQ9NUG4 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CCM2LQ9NUG4 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
CCM2LQ9NUG4 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
CCM2LQ9NUG4 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC18.57■□□□□ 0.56
CCM2LQ9NUG4 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CCM2LQ9NUG4 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CCM2LQ9NUG4 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CCM2LQ9NUG4 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCM2LQ9NUG4 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CCM2LQ9NUG4 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC18.56■□□□□ 0.56
CCM2LQ9NUG4 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC18.56■□□□□ 0.56
CCM2LQ9NUG4 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC18.56■□□□□ 0.56
CCM2LQ9NUG4 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CCM2LQ9NUG4 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCM2LQ9NUG4 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CCM2LQ9NUG4 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC18.56■□□□□ 0.56
CCM2LQ9NUG4 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCM2LQ9NUG4 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCM2LQ9NUG4 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
CCM2LQ9NUG4 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC18.56■□□□□ 0.56
CCM2LQ9NUG4 AC104187.1-201ENST00000607510 612 ntBASIC18.56■□□□□ 0.56
CCM2LQ9NUG4 AC243732.1-201ENST00000612648 864 ntBASIC18.56■□□□□ 0.56
CCM2LQ9NUG4 AC133041.1-202ENST00000642053 222 ntBASIC18.56■□□□□ 0.56
CCM2LQ9NUG4 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC18.56■□□□□ 0.56
CCM2LQ9NUG4 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
CCM2LQ9NUG4 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC18.56■□□□□ 0.56
CCM2LQ9NUG4 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCM2LQ9NUG4 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCM2LQ9NUG4 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CCM2LQ9NUG4 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
CCM2LQ9NUG4 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
CCM2LQ9NUG4 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
CCM2LQ9NUG4 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC18.56■□□□□ 0.56
CCM2LQ9NUG4 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
CCM2LQ9NUG4 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCM2LQ9NUG4 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCM2LQ9NUG4 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCM2LQ9NUG4 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
CCM2LQ9NUG4 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCM2LQ9NUG4 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCM2LQ9NUG4 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC18.55■□□□□ 0.56
CCM2LQ9NUG4 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCM2LQ9NUG4 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC18.55■□□□□ 0.56
CCM2LQ9NUG4 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CCM2LQ9NUG4 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCM2LQ9NUG4 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CCM2LQ9NUG4 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC18.55■□□□□ 0.56
CCM2LQ9NUG4 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC18.55■□□□□ 0.56
CCM2LQ9NUG4 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC18.55■□□□□ 0.56
CCM2LQ9NUG4 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC18.55■□□□□ 0.56
CCM2LQ9NUG4 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC18.55■□□□□ 0.56
CCM2LQ9NUG4 ARL16-209ENST00000573715 763 ntTSL 3 BASIC18.55■□□□□ 0.56
CCM2LQ9NUG4 ARL16-211ENST00000576135 694 ntTSL 3 BASIC18.55■□□□□ 0.56
CCM2LQ9NUG4 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCM2LQ9NUG4 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
CCM2LQ9NUG4 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCM2LQ9NUG4 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCM2LQ9NUG4 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC18.55■□□□□ 0.56
CCM2LQ9NUG4 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
CCM2LQ9NUG4 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCM2LQ9NUG4 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCM2LQ9NUG4 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CCM2LQ9NUG4 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCM2LQ9NUG4 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC18.54■□□□□ 0.56
CCM2LQ9NUG4 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCM2LQ9NUG4 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCM2LQ9NUG4 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC18.54■□□□□ 0.56
CCM2LQ9NUG4 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC18.54■□□□□ 0.56
CCM2LQ9NUG4 RBM24-202ENST00000379052 2703 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCM2LQ9NUG4 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CCM2LQ9NUG4 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCM2LQ9NUG4 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCM2LQ9NUG4 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC18.54■□□□□ 0.56
CCM2LQ9NUG4 PARP1-202ENST00000366792 553 ntTSL 3 BASIC18.54■□□□□ 0.56
CCM2LQ9NUG4 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC18.54■□□□□ 0.56
CCM2LQ9NUG4 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CCM2LQ9NUG4 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
CCM2LQ9NUG4 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCM2LQ9NUG4 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
CCM2LQ9NUG4 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CCM2LQ9NUG4 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CCM2LQ9NUG4 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
CCM2LQ9NUG4 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
CCM2LQ9NUG4 AP001271.2-201ENST00000624018 1556 ntBASIC18.54■□□□□ 0.56
CCM2LQ9NUG4 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 57.6 ms