Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
USP42Q9H9J4 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
USP42Q9H9J4 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
USP42Q9H9J4 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC24.89■■□□□ 1.58
USP42Q9H9J4 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC24.89■■□□□ 1.58
USP42Q9H9J4 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC24.89■■□□□ 1.58
USP42Q9H9J4 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC24.89■■□□□ 1.58
USP42Q9H9J4 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC24.89■■□□□ 1.58
USP42Q9H9J4 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
USP42Q9H9J4 PTPA-216ENST00000432651 857 ntTSL 2 BASIC24.89■■□□□ 1.58
USP42Q9H9J4 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC24.89■■□□□ 1.58
USP42Q9H9J4 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC24.89■■□□□ 1.58
USP42Q9H9J4 TOLLIP-AS1-201ENST00000530897 939 ntBASIC24.89■■□□□ 1.58
USP42Q9H9J4 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC24.89■■□□□ 1.58
USP42Q9H9J4 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC24.89■■□□□ 1.58
USP42Q9H9J4 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
USP42Q9H9J4 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC24.89■■□□□ 1.57
USP42Q9H9J4 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.57
USP42Q9H9J4 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC24.89■■□□□ 1.57
USP42Q9H9J4 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC24.89■■□□□ 1.57
USP42Q9H9J4 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC24.88■■□□□ 1.57
USP42Q9H9J4 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC24.88■■□□□ 1.57
USP42Q9H9J4 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
USP42Q9H9J4 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC24.88■■□□□ 1.57
USP42Q9H9J4 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC24.88■■□□□ 1.57
USP42Q9H9J4 AC004951.3-201ENST00000418645 1148 ntBASIC24.88■■□□□ 1.57
USP42Q9H9J4 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC24.88■■□□□ 1.57
USP42Q9H9J4 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC24.88■■□□□ 1.57
USP42Q9H9J4 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC24.88■■□□□ 1.57
USP42Q9H9J4 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC24.88■■□□□ 1.57
USP42Q9H9J4 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC24.88■■□□□ 1.57
USP42Q9H9J4 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC24.88■■□□□ 1.57
USP42Q9H9J4 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
USP42Q9H9J4 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC24.88■■□□□ 1.57
USP42Q9H9J4 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
USP42Q9H9J4 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC24.88■■□□□ 1.57
USP42Q9H9J4 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
USP42Q9H9J4 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
USP42Q9H9J4 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
USP42Q9H9J4 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
USP42Q9H9J4 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC24.88■■□□□ 1.57
USP42Q9H9J4 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC24.88■■□□□ 1.57
USP42Q9H9J4 LINC01521-201ENST00000504184 1943 ntBASIC24.88■■□□□ 1.57
USP42Q9H9J4 COPS8-203ENST00000409334 794 ntTSL 5 BASIC24.87■■□□□ 1.57
USP42Q9H9J4 TSPY5P-201ENST00000426936 936 ntBASIC24.87■■□□□ 1.57
USP42Q9H9J4 SLC25A1P2-201ENST00000430693 912 ntBASIC24.87■■□□□ 1.57
USP42Q9H9J4 AC009947.2-201ENST00000444014 672 ntBASIC24.87■■□□□ 1.57
USP42Q9H9J4 CCR12P-201ENST00000446203 998 ntBASIC24.87■■□□□ 1.57
USP42Q9H9J4 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
USP42Q9H9J4 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC24.87■■□□□ 1.57
USP42Q9H9J4 GPX4-207ENST00000589115 812 ntTSL 2 BASIC24.87■■□□□ 1.57
USP42Q9H9J4 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC24.87■■□□□ 1.57
USP42Q9H9J4 AP000550.4-202ENST00000639755 178 ntBASIC24.87■■□□□ 1.57
USP42Q9H9J4 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
USP42Q9H9J4 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
USP42Q9H9J4 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC24.87■■□□□ 1.57
USP42Q9H9J4 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC24.87■■□□□ 1.57
USP42Q9H9J4 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC24.87■■□□□ 1.57
USP42Q9H9J4 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
USP42Q9H9J4 AL162377.1-201ENST00000618844 1793 ntBASIC24.87■■□□□ 1.57
USP42Q9H9J4 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
USP42Q9H9J4 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC24.87■■□□□ 1.57
USP42Q9H9J4 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
USP42Q9H9J4 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC24.87■■□□□ 1.57
USP42Q9H9J4 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
USP42Q9H9J4 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC24.86■■□□□ 1.57
USP42Q9H9J4 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
USP42Q9H9J4 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC24.86■■□□□ 1.57
USP42Q9H9J4 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
USP42Q9H9J4 CD70-202ENST00000423145 881 ntTSL 2 BASIC24.86■■□□□ 1.57
USP42Q9H9J4 KRT16P6-202ENST00000425692 1426 ntBASIC24.86■■□□□ 1.57
USP42Q9H9J4 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC24.86■■□□□ 1.57
USP42Q9H9J4 AC007663.1-201ENST00000438948 1240 ntBASIC24.86■■□□□ 1.57
USP42Q9H9J4 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC24.86■■□□□ 1.57
USP42Q9H9J4 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
USP42Q9H9J4 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC24.86■■□□□ 1.57
USP42Q9H9J4 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
USP42Q9H9J4 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC24.86■■□□□ 1.57
USP42Q9H9J4 AL121894.2-201ENST00000602977 491 ntBASIC24.86■■□□□ 1.57
USP42Q9H9J4 AC010653.2-201ENST00000623505 997 ntBASIC24.86■■□□□ 1.57
USP42Q9H9J4 DET1-207ENST00000564406 2315 ntTSL 2 BASIC24.86■■□□□ 1.57
USP42Q9H9J4 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
USP42Q9H9J4 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC24.86■■□□□ 1.57
USP42Q9H9J4 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC24.86■■□□□ 1.57
USP42Q9H9J4 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
USP42Q9H9J4 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC24.86■■□□□ 1.57
USP42Q9H9J4 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC24.86■■□□□ 1.57
USP42Q9H9J4 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC24.86■■□□□ 1.57
USP42Q9H9J4 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
USP42Q9H9J4 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC24.86■■□□□ 1.57
USP42Q9H9J4 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
USP42Q9H9J4 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
USP42Q9H9J4 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC24.86■■□□□ 1.57
USP42Q9H9J4 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
USP42Q9H9J4 FAM207BP-201ENST00000447172 505 ntBASIC24.86■■□□□ 1.57
USP42Q9H9J4 KRT18P56-201ENST00000507275 550 ntBASIC24.86■■□□□ 1.57
USP42Q9H9J4 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
USP42Q9H9J4 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC24.86■■□□□ 1.57
USP42Q9H9J4 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC24.85■■□□□ 1.57
USP42Q9H9J4 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC24.85■■□□□ 1.57
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms