Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
COL25A1Q9BXS0 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL25A1Q9BXS0 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL25A1Q9BXS0 YBX2P1-201ENST00000394192 760 ntBASIC19.94■□□□□ 0.78
COL25A1Q9BXS0 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC19.94■□□□□ 0.78
COL25A1Q9BXS0 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
COL25A1Q9BXS0 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC19.94■□□□□ 0.78
COL25A1Q9BXS0 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC19.94■□□□□ 0.78
COL25A1Q9BXS0 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC19.94■□□□□ 0.78
COL25A1Q9BXS0 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL25A1Q9BXS0 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
COL25A1Q9BXS0 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL25A1Q9BXS0 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC19.94■□□□□ 0.78
COL25A1Q9BXS0 LITAF-211ENST00000572255 516 ntTSL 4 BASIC19.94■□□□□ 0.78
COL25A1Q9BXS0 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC19.94■□□□□ 0.78
COL25A1Q9BXS0 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL25A1Q9BXS0 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
COL25A1Q9BXS0 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
COL25A1Q9BXS0 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC19.94■□□□□ 0.78
COL25A1Q9BXS0 MIR1199-201ENST00000621445 119 ntBASIC19.94■□□□□ 0.78
COL25A1Q9BXS0 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC19.94■□□□□ 0.78
COL25A1Q9BXS0 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC19.94■□□□□ 0.78
COL25A1Q9BXS0 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC19.94■□□□□ 0.78
COL25A1Q9BXS0 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
COL25A1Q9BXS0 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC19.93■□□□□ 0.78
COL25A1Q9BXS0 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
COL25A1Q9BXS0 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC19.93■□□□□ 0.78
COL25A1Q9BXS0 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC19.93■□□□□ 0.78
COL25A1Q9BXS0 SCARNA2-201ENST00000458748 420 ntBASIC19.93■□□□□ 0.78
COL25A1Q9BXS0 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC19.93■□□□□ 0.78
COL25A1Q9BXS0 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC19.93■□□□□ 0.78
COL25A1Q9BXS0 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC19.93■□□□□ 0.78
COL25A1Q9BXS0 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC19.93■□□□□ 0.78
COL25A1Q9BXS0 AL049840.3-201ENST00000602669 611 ntBASIC19.93■□□□□ 0.78
COL25A1Q9BXS0 AL356488.2-201ENST00000602755 427 ntBASIC19.93■□□□□ 0.78
COL25A1Q9BXS0 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC19.93■□□□□ 0.78
COL25A1Q9BXS0 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
COL25A1Q9BXS0 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
COL25A1Q9BXS0 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
COL25A1Q9BXS0 LINC00167-201ENST00000530583 1419 ntBASIC19.93■□□□□ 0.78
COL25A1Q9BXS0 AL121749.1-202ENST00000609313 2153 ntBASIC19.93■□□□□ 0.78
COL25A1Q9BXS0 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL25A1Q9BXS0 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
COL25A1Q9BXS0 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL25A1Q9BXS0 MED17-227ENST00000640521 2047 ntTSL 5 BASIC19.92■□□□□ 0.78
COL25A1Q9BXS0 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL25A1Q9BXS0 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL25A1Q9BXS0 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL25A1Q9BXS0 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
COL25A1Q9BXS0 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
COL25A1Q9BXS0 LSM5-204ENST00000409909 740 ntTSL 2 BASIC19.92■□□□□ 0.78
COL25A1Q9BXS0 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC19.92■□□□□ 0.78
COL25A1Q9BXS0 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC19.92■□□□□ 0.78
COL25A1Q9BXS0 Z85996.1-201ENST00000494644 937 ntBASIC19.92■□□□□ 0.78
COL25A1Q9BXS0 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC19.92■□□□□ 0.78
COL25A1Q9BXS0 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC19.92■□□□□ 0.78
COL25A1Q9BXS0 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC19.92■□□□□ 0.78
COL25A1Q9BXS0 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
COL25A1Q9BXS0 AC011467.4-201ENST00000594891 528 ntBASIC19.92■□□□□ 0.78
COL25A1Q9BXS0 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC19.92■□□□□ 0.78
COL25A1Q9BXS0 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
COL25A1Q9BXS0 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
COL25A1Q9BXS0 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
COL25A1Q9BXS0 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
COL25A1Q9BXS0 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
COL25A1Q9BXS0 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
COL25A1Q9BXS0 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
COL25A1Q9BXS0 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
COL25A1Q9BXS0 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC19.91■□□□□ 0.78
COL25A1Q9BXS0 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
COL25A1Q9BXS0 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
COL25A1Q9BXS0 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC19.91■□□□□ 0.78
COL25A1Q9BXS0 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL25A1Q9BXS0 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC19.91■□□□□ 0.78
COL25A1Q9BXS0 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL25A1Q9BXS0 SYS1-203ENST00000414310 795 ntTSL 3 BASIC19.91■□□□□ 0.78
COL25A1Q9BXS0 DNAJB3-201ENST00000446806 729 ntBASIC19.91■□□□□ 0.78
COL25A1Q9BXS0 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC19.91■□□□□ 0.78
COL25A1Q9BXS0 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL25A1Q9BXS0 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
COL25A1Q9BXS0 TK1-205ENST00000590862 642 ntTSL 3 BASIC19.91■□□□□ 0.78
COL25A1Q9BXS0 AC027601.4-201ENST00000611259 610 ntBASIC19.91■□□□□ 0.78
COL25A1Q9BXS0 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC19.91■□□□□ 0.78
COL25A1Q9BXS0 MIR7706-201ENST00000613747 67 ntBASIC19.91■□□□□ 0.78
COL25A1Q9BXS0 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
COL25A1Q9BXS0 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL25A1Q9BXS0 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL25A1Q9BXS0 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC19.9■□□□□ 0.78
COL25A1Q9BXS0 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC19.9■□□□□ 0.78
COL25A1Q9BXS0 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC19.9■□□□□ 0.78
COL25A1Q9BXS0 NMU-202ENST00000505262 693 ntTSL 3 BASIC19.9■□□□□ 0.78
COL25A1Q9BXS0 IGHV3-22-201ENST00000520721 359 ntBASIC19.9■□□□□ 0.78
COL25A1Q9BXS0 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC19.9■□□□□ 0.78
COL25A1Q9BXS0 AC009084.1-201ENST00000566869 317 ntTSL 5 BASIC19.9■□□□□ 0.78
COL25A1Q9BXS0 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC19.9■□□□□ 0.78
COL25A1Q9BXS0 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC19.9■□□□□ 0.78
COL25A1Q9BXS0 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
COL25A1Q9BXS0 KRT16P6-202ENST00000425692 1426 ntBASIC19.9■□□□□ 0.78
COL25A1Q9BXS0 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
COL25A1Q9BXS0 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms