Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC21.41■■□□□ 1.02
TRAIPQ9BWF2 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC21.41■■□□□ 1.02
TRAIPQ9BWF2 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
TRAIPQ9BWF2 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC21.41■■□□□ 1.02
TRAIPQ9BWF2 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
TRAIPQ9BWF2 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
TRAIPQ9BWF2 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC21.41■■□□□ 1.02
TRAIPQ9BWF2 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
TRAIPQ9BWF2 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
TRAIPQ9BWF2 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
TRAIPQ9BWF2 GOLGA6L3-201ENST00000507199 1679 ntBASIC21.41■■□□□ 1.02
TRAIPQ9BWF2 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC21.41■■□□□ 1.02
TRAIPQ9BWF2 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC21.41■■□□□ 1.02
TRAIPQ9BWF2 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC21.41■■□□□ 1.02
TRAIPQ9BWF2 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
TRAIPQ9BWF2 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC21.41■■□□□ 1.02
TRAIPQ9BWF2 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC21.41■■□□□ 1.02
TRAIPQ9BWF2 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
TRAIPQ9BWF2 FITM1-202ENST00000559294 800 ntBASIC21.41■■□□□ 1.02
TRAIPQ9BWF2 AC145285.6-201ENST00000604632 637 ntBASIC21.41■■□□□ 1.02
TRAIPQ9BWF2 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
TRAIPQ9BWF2 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
TRAIPQ9BWF2 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
TRAIPQ9BWF2 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
TRAIPQ9BWF2 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC21.4■■□□□ 1.02
TRAIPQ9BWF2 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
TRAIPQ9BWF2 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC21.4■■□□□ 1.02
TRAIPQ9BWF2 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
TRAIPQ9BWF2 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
TRAIPQ9BWF2 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
TRAIPQ9BWF2 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC21.4■■□□□ 1.02
TRAIPQ9BWF2 TUBB8P6-201ENST00000436895 1288 ntBASIC21.4■■□□□ 1.02
TRAIPQ9BWF2 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
TRAIPQ9BWF2 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC21.4■■□□□ 1.02
TRAIPQ9BWF2 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC21.4■■□□□ 1.02
TRAIPQ9BWF2 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
TRAIPQ9BWF2 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
TRAIPQ9BWF2 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC21.4■■□□□ 1.02
TRAIPQ9BWF2 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
TRAIPQ9BWF2 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
TRAIPQ9BWF2 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
TRAIPQ9BWF2 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC21.39■■□□□ 1.02
TRAIPQ9BWF2 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.02
TRAIPQ9BWF2 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
TRAIPQ9BWF2 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC21.39■■□□□ 1.02
TRAIPQ9BWF2 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
TRAIPQ9BWF2 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
TRAIPQ9BWF2 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
TRAIPQ9BWF2 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
TRAIPQ9BWF2 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
TRAIPQ9BWF2 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC21.39■■□□□ 1.01
TRAIPQ9BWF2 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC21.39■■□□□ 1.01
TRAIPQ9BWF2 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC21.39■■□□□ 1.01
TRAIPQ9BWF2 AP000525.1-201ENST00000608286 694 ntBASIC21.39■■□□□ 1.01
TRAIPQ9BWF2 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC21.39■■□□□ 1.01
TRAIPQ9BWF2 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC21.39■■□□□ 1.01
TRAIPQ9BWF2 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC21.39■■□□□ 1.01
TRAIPQ9BWF2 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC21.39■■□□□ 1.01
TRAIPQ9BWF2 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
TRAIPQ9BWF2 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC21.39■■□□□ 1.01
TRAIPQ9BWF2 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
TRAIPQ9BWF2 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
TRAIPQ9BWF2 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.01
TRAIPQ9BWF2 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC21.38■■□□□ 1.01
TRAIPQ9BWF2 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
TRAIPQ9BWF2 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
TRAIPQ9BWF2 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
TRAIPQ9BWF2 CD37-204ENST00000535669 1674 ntTSL 2 BASIC21.38■■□□□ 1.01
TRAIPQ9BWF2 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC21.38■■□□□ 1.01
TRAIPQ9BWF2 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
TRAIPQ9BWF2 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
TRAIPQ9BWF2 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
TRAIPQ9BWF2 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC21.38■■□□□ 1.01
TRAIPQ9BWF2 MESTP1-201ENST00000404287 994 ntBASIC21.38■■□□□ 1.01
TRAIPQ9BWF2 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC21.38■■□□□ 1.01
TRAIPQ9BWF2 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC21.38■■□□□ 1.01
TRAIPQ9BWF2 PPOX-219ENST00000544598 813 ntTSL 2 BASIC21.38■■□□□ 1.01
TRAIPQ9BWF2 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC21.38■■□□□ 1.01
TRAIPQ9BWF2 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC21.38■■□□□ 1.01
TRAIPQ9BWF2 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC21.38■■□□□ 1.01
TRAIPQ9BWF2 BX119927.1-201ENST00000636596 1552 ntBASIC21.38■■□□□ 1.01
TRAIPQ9BWF2 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
TRAIPQ9BWF2 FSCN1P1-201ENST00000568912 1481 ntBASIC21.38■■□□□ 1.01
TRAIPQ9BWF2 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
TRAIPQ9BWF2 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
TRAIPQ9BWF2 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
TRAIPQ9BWF2 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC21.38■■□□□ 1.01
TRAIPQ9BWF2 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
TRAIPQ9BWF2 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
TRAIPQ9BWF2 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
TRAIPQ9BWF2 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
TRAIPQ9BWF2 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
TRAIPQ9BWF2 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
TRAIPQ9BWF2 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC21.37■■□□□ 1.01
TRAIPQ9BWF2 SMG8-203ENST00000578922 2178 ntBASIC21.37■■□□□ 1.01
TRAIPQ9BWF2 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
TRAIPQ9BWF2 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
TRAIPQ9BWF2 RCN1P1-201ENST00000400413 996 ntBASIC21.37■■□□□ 1.01
TRAIPQ9BWF2 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
TRAIPQ9BWF2 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC21.37■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms