Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 MIR4674-201ENST00000582457 87 ntBASIC32.56■■■□□ 2.8
IFT140Q96RY7 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC32.56■■■□□ 2.8
IFT140Q96RY7 C16orf74-203ENST00000602675 744 ntAPPRIS ALT2 TSL 1 (best) BASIC32.56■■■□□ 2.8
IFT140Q96RY7 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC32.56■■■□□ 2.8
IFT140Q96RY7 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC32.56■■■□□ 2.8
IFT140Q96RY7 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC32.56■■■□□ 2.8
IFT140Q96RY7 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC32.56■■■□□ 2.8
IFT140Q96RY7 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC32.56■■■□□ 2.8
IFT140Q96RY7 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC32.56■■■□□ 2.8
IFT140Q96RY7 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC32.55■■■□□ 2.8
IFT140Q96RY7 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC32.55■■■□□ 2.8
IFT140Q96RY7 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC32.55■■■□□ 2.8
IFT140Q96RY7 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC32.55■■■□□ 2.8
IFT140Q96RY7 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC32.55■■■□□ 2.8
IFT140Q96RY7 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC32.55■■■□□ 2.8
IFT140Q96RY7 BX276092.5-203ENST00000456199 560 ntBASIC32.55■■■□□ 2.8
IFT140Q96RY7 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC32.55■■■□□ 2.8
IFT140Q96RY7 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC32.55■■■□□ 2.8
IFT140Q96RY7 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC32.55■■■□□ 2.8
IFT140Q96RY7 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC32.55■■■□□ 2.8
IFT140Q96RY7 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC32.55■■■□□ 2.8
IFT140Q96RY7 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC32.55■■■□□ 2.8
IFT140Q96RY7 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC32.55■■■□□ 2.8
IFT140Q96RY7 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC32.55■■■□□ 2.8
IFT140Q96RY7 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC32.55■■■□□ 2.8
IFT140Q96RY7 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC32.55■■■□□ 2.8
IFT140Q96RY7 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC32.55■■■□□ 2.8
IFT140Q96RY7 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC32.54■■■□□ 2.8
IFT140Q96RY7 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC32.54■■■□□ 2.8
IFT140Q96RY7 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC32.54■■■□□ 2.8
IFT140Q96RY7 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC32.54■■■□□ 2.8
IFT140Q96RY7 AC092597.1-201ENST00000487352 616 ntBASIC32.54■■■□□ 2.8
IFT140Q96RY7 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC32.54■■■□□ 2.8
IFT140Q96RY7 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC32.54■■■□□ 2.8
IFT140Q96RY7 AP002414.4-201ENST00000589764 1148 ntBASIC32.54■■■□□ 2.8
IFT140Q96RY7 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC32.54■■■□□ 2.8
IFT140Q96RY7 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC32.54■■■□□ 2.8
IFT140Q96RY7 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC32.54■■■□□ 2.8
IFT140Q96RY7 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC32.54■■■□□ 2.8
IFT140Q96RY7 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC32.54■■■□□ 2.8
IFT140Q96RY7 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC32.54■■■□□ 2.8
IFT140Q96RY7 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC32.54■■■□□ 2.8
IFT140Q96RY7 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC32.54■■■□□ 2.8
IFT140Q96RY7 RASA4DP-201ENST00000460726 1199 ntBASIC32.54■■■□□ 2.8
IFT140Q96RY7 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC32.54■■■□□ 2.8
IFT140Q96RY7 AC011498.5-201ENST00000592027 486 ntBASIC32.54■■■□□ 2.8
IFT140Q96RY7 AL049796.1-201ENST00000565336 1766 ntBASIC32.54■■■□□ 2.8
IFT140Q96RY7 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC32.53■■■□□ 2.8
IFT140Q96RY7 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC32.53■■■□□ 2.8
IFT140Q96RY7 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC32.53■■■□□ 2.8
IFT140Q96RY7 AC244015.2-201ENST00000616358 1861 ntBASIC32.53■■■□□ 2.8
IFT140Q96RY7 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC32.53■■■□□ 2.8
IFT140Q96RY7 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC32.53■■■□□ 2.8
IFT140Q96RY7 NAPSB-203ENST00000531692 561 ntTSL 2 BASIC32.53■■■□□ 2.8
IFT140Q96RY7 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC32.53■■■□□ 2.8
IFT140Q96RY7 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC32.53■■■□□ 2.8
IFT140Q96RY7 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC32.53■■■□□ 2.8
IFT140Q96RY7 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC32.53■■■□□ 2.8
IFT140Q96RY7 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC32.52■■■□□ 2.8
IFT140Q96RY7 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC32.52■■■□□ 2.8
IFT140Q96RY7 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC32.52■■■□□ 2.8
IFT140Q96RY7 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC32.52■■■□□ 2.8
IFT140Q96RY7 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC32.52■■■□□ 2.8
IFT140Q96RY7 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC32.52■■■□□ 2.8
IFT140Q96RY7 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC32.52■■■□□ 2.8
IFT140Q96RY7 AP002469.2-201ENST00000531724 424 ntBASIC32.52■■■□□ 2.8
IFT140Q96RY7 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC32.52■■■□□ 2.8
IFT140Q96RY7 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC32.52■■■□□ 2.8
IFT140Q96RY7 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC32.52■■■□□ 2.8
IFT140Q96RY7 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC32.51■■■□□ 2.8
IFT140Q96RY7 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC32.51■■■□□ 2.8
IFT140Q96RY7 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC32.51■■■□□ 2.8
IFT140Q96RY7 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC32.51■■■□□ 2.8
IFT140Q96RY7 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC32.51■■■□□ 2.8
IFT140Q96RY7 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC32.51■■■□□ 2.8
IFT140Q96RY7 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC32.51■■■□□ 2.8
IFT140Q96RY7 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC32.51■■■□□ 2.8
IFT140Q96RY7 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC32.51■■■□□ 2.8
IFT140Q96RY7 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC32.51■■■□□ 2.79
IFT140Q96RY7 NME1-207ENST00000480143 964 ntTSL 2 BASIC32.51■■■□□ 2.79
IFT140Q96RY7 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC32.51■■■□□ 2.79
IFT140Q96RY7 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC32.51■■■□□ 2.79
IFT140Q96RY7 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC32.51■■■□□ 2.79
IFT140Q96RY7 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC32.51■■■□□ 2.79
IFT140Q96RY7 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC32.5■■■□□ 2.79
IFT140Q96RY7 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC32.5■■■□□ 2.79
IFT140Q96RY7 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC32.5■■■□□ 2.79
IFT140Q96RY7 AC139530.3-201ENST00000620344 690 ntBASIC32.5■■■□□ 2.79
IFT140Q96RY7 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC32.5■■■□□ 2.79
IFT140Q96RY7 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC32.5■■■□□ 2.79
IFT140Q96RY7 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC32.5■■■□□ 2.79
IFT140Q96RY7 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC32.5■■■□□ 2.79
IFT140Q96RY7 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC32.5■■■□□ 2.79
IFT140Q96RY7 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC32.49■■■□□ 2.79
IFT140Q96RY7 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC32.49■■■□□ 2.79
IFT140Q96RY7 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC32.49■■■□□ 2.79
IFT140Q96RY7 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC32.49■■■□□ 2.79
IFT140Q96RY7 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC32.49■■■□□ 2.79
IFT140Q96RY7 C9orf163-202ENST00000624034 2573 ntBASIC32.49■■■□□ 2.79
IFT140Q96RY7 AC093525.10-201ENST00000625130 1569 ntBASIC32.49■■■□□ 2.79
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms