Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC14.63□□□□□ -0.07
LINC00477Q96M19 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC14.63□□□□□ -0.07
LINC00477Q96M19 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
LINC00477Q96M19 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC14.63□□□□□ -0.07
LINC00477Q96M19 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC14.63□□□□□ -0.07
LINC00477Q96M19 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
LINC00477Q96M19 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
LINC00477Q96M19 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
LINC00477Q96M19 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
LINC00477Q96M19 AL390719.1-204ENST00000412397 1219 ntBASIC14.63□□□□□ -0.07
LINC00477Q96M19 AC093787.1-201ENST00000450396 207 ntBASIC14.63□□□□□ -0.07
LINC00477Q96M19 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
LINC00477Q96M19 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC14.63□□□□□ -0.07
LINC00477Q96M19 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC14.63□□□□□ -0.07
LINC00477Q96M19 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC14.63□□□□□ -0.07
LINC00477Q96M19 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC14.63□□□□□ -0.07
LINC00477Q96M19 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC14.63□□□□□ -0.07
LINC00477Q96M19 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
LINC00477Q96M19 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
LINC00477Q96M19 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
LINC00477Q96M19 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
LINC00477Q96M19 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC14.63□□□□□ -0.07
LINC00477Q96M19 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC14.63□□□□□ -0.07
LINC00477Q96M19 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
LINC00477Q96M19 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC14.63□□□□□ -0.07
LINC00477Q96M19 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
LINC00477Q96M19 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC14.62□□□□□ -0.07
LINC00477Q96M19 PTGES2-AS1-201ENST00000443493 2100 ntBASIC14.62□□□□□ -0.07
LINC00477Q96M19 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
LINC00477Q96M19 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
LINC00477Q96M19 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC14.62□□□□□ -0.07
LINC00477Q96M19 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
LINC00477Q96M19 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
LINC00477Q96M19 GPX1P1-201ENST00000388829 606 ntBASIC14.62□□□□□ -0.07
LINC00477Q96M19 CALM3-202ENST00000391918 702 ntTSL 2 BASIC14.62□□□□□ -0.07
LINC00477Q96M19 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC14.62□□□□□ -0.07
LINC00477Q96M19 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
LINC00477Q96M19 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC14.62□□□□□ -0.07
LINC00477Q96M19 AL162430.1-201ENST00000480705 870 ntBASIC14.62□□□□□ -0.07
LINC00477Q96M19 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
LINC00477Q96M19 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC14.62□□□□□ -0.07
LINC00477Q96M19 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC14.62□□□□□ -0.07
LINC00477Q96M19 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
LINC00477Q96M19 AC116351.2-201ENST00000606540 1585 ntBASIC14.62□□□□□ -0.07
LINC00477Q96M19 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
LINC00477Q96M19 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
LINC00477Q96M19 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC14.62□□□□□ -0.07
LINC00477Q96M19 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
LINC00477Q96M19 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
LINC00477Q96M19 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
LINC00477Q96M19 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
LINC00477Q96M19 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC14.62□□□□□ -0.07
LINC00477Q96M19 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
LINC00477Q96M19 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC14.62□□□□□ -0.07
LINC00477Q96M19 MOK-233ENST00000524214 1539 ntTSL 2 BASIC14.61□□□□□ -0.07
LINC00477Q96M19 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
LINC00477Q96M19 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
LINC00477Q96M19 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC14.61□□□□□ -0.07
LINC00477Q96M19 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC14.61□□□□□ -0.07
LINC00477Q96M19 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC14.61□□□□□ -0.07
LINC00477Q96M19 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
LINC00477Q96M19 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC14.61□□□□□ -0.07
LINC00477Q96M19 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
LINC00477Q96M19 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC14.61□□□□□ -0.07
LINC00477Q96M19 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
LINC00477Q96M19 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC14.61□□□□□ -0.07
LINC00477Q96M19 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC14.61□□□□□ -0.07
LINC00477Q96M19 LINC01465-201ENST00000408887 1940 ntBASIC14.61□□□□□ -0.07
LINC00477Q96M19 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
LINC00477Q96M19 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
LINC00477Q96M19 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC14.61□□□□□ -0.07
LINC00477Q96M19 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
LINC00477Q96M19 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
LINC00477Q96M19 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC14.61□□□□□ -0.07
LINC00477Q96M19 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC14.61□□□□□ -0.07
LINC00477Q96M19 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
LINC00477Q96M19 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
LINC00477Q96M19 SERP1-205ENST00000487153 657 ntTSL 4 BASIC14.61□□□□□ -0.07
LINC00477Q96M19 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
LINC00477Q96M19 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC14.61□□□□□ -0.07
LINC00477Q96M19 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC14.61□□□□□ -0.07
LINC00477Q96M19 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
LINC00477Q96M19 ANKRD20A6P-201ENST00000618763 204 ntBASIC14.61□□□□□ -0.07
LINC00477Q96M19 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC14.61□□□□□ -0.07
LINC00477Q96M19 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
LINC00477Q96M19 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
LINC00477Q96M19 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC14.61□□□□□ -0.07
LINC00477Q96M19 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
LINC00477Q96M19 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
LINC00477Q96M19 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
LINC00477Q96M19 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC14.61□□□□□ -0.07
LINC00477Q96M19 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
LINC00477Q96M19 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
LINC00477Q96M19 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC14.61□□□□□ -0.07
LINC00477Q96M19 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
LINC00477Q96M19 ITPKB-202ENST00000366784 3146 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
LINC00477Q96M19 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC14.61□□□□□ -0.07
LINC00477Q96M19 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
LINC00477Q96M19 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
LINC00477Q96M19 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms