Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 RPL18-214ENST00000552588 559 ntTSL 3 BASIC19.97■□□□□ 0.79
TTC28Q96AY4 PNN-202ENST00000553331 656 ntTSL 3 BASIC19.97■□□□□ 0.79
TTC28Q96AY4 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC19.97■□□□□ 0.79
TTC28Q96AY4 TP73-AS1-207ENST00000624167 988 ntBASIC19.97■□□□□ 0.79
TTC28Q96AY4 HLA-A-209ENST00000638375 975 ntBASIC19.97■□□□□ 0.79
TTC28Q96AY4 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
TTC28Q96AY4 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
TTC28Q96AY4 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
TTC28Q96AY4 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
TTC28Q96AY4 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC19.97■□□□□ 0.79
TTC28Q96AY4 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
TTC28Q96AY4 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC19.97■□□□□ 0.79
TTC28Q96AY4 HLA-F-220ENST00000434407 884 ntBASIC19.97■□□□□ 0.79
TTC28Q96AY4 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
TTC28Q96AY4 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC19.97■□□□□ 0.79
TTC28Q96AY4 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC19.97■□□□□ 0.79
TTC28Q96AY4 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC19.97■□□□□ 0.79
TTC28Q96AY4 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
TTC28Q96AY4 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC19.97■□□□□ 0.79
TTC28Q96AY4 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC19.97■□□□□ 0.79
TTC28Q96AY4 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
TTC28Q96AY4 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC19.97■□□□□ 0.79
TTC28Q96AY4 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
TTC28Q96AY4 PREB-202ENST00000406567 1910 ntTSL 5 BASIC19.96■□□□□ 0.79
TTC28Q96AY4 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC19.96■□□□□ 0.79
TTC28Q96AY4 GOLGA6L3-201ENST00000507199 1679 ntBASIC19.96■□□□□ 0.79
TTC28Q96AY4 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC19.96■□□□□ 0.79
TTC28Q96AY4 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC19.96■□□□□ 0.79
TTC28Q96AY4 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC19.96■□□□□ 0.79
TTC28Q96AY4 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
TTC28Q96AY4 AKR1C7P-201ENST00000305623 895 ntBASIC19.96■□□□□ 0.79
TTC28Q96AY4 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
TTC28Q96AY4 FAM8A3P-201ENST00000427218 844 ntBASIC19.96■□□□□ 0.79
TTC28Q96AY4 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC19.96■□□□□ 0.79
TTC28Q96AY4 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
TTC28Q96AY4 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC19.96■□□□□ 0.79
TTC28Q96AY4 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
TTC28Q96AY4 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC19.96■□□□□ 0.79
TTC28Q96AY4 LINC00167-201ENST00000530583 1419 ntBASIC19.96■□□□□ 0.79
TTC28Q96AY4 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
TTC28Q96AY4 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
TTC28Q96AY4 TSPY22P-201ENST00000427496 604 ntBASIC19.96■□□□□ 0.79
TTC28Q96AY4 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
TTC28Q96AY4 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC19.95■□□□□ 0.78
TTC28Q96AY4 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
TTC28Q96AY4 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
TTC28Q96AY4 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC19.95■□□□□ 0.78
TTC28Q96AY4 URGCP-206ENST00000446958 365 ntTSL 2 BASIC19.95■□□□□ 0.78
TTC28Q96AY4 SAPCD2P3-201ENST00000455031 850 ntBASIC19.95■□□□□ 0.78
TTC28Q96AY4 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC19.95■□□□□ 0.78
TTC28Q96AY4 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
TTC28Q96AY4 AC134684.3-201ENST00000641758 218 ntBASIC19.95■□□□□ 0.78
TTC28Q96AY4 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC19.95■□□□□ 0.78
TTC28Q96AY4 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
TTC28Q96AY4 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
TTC28Q96AY4 CALM3-202ENST00000391918 702 ntTSL 2 BASIC19.95■□□□□ 0.78
TTC28Q96AY4 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC19.95■□□□□ 0.78
TTC28Q96AY4 MOK-208ENST00000519058 917 ntTSL 2 BASIC19.95■□□□□ 0.78
TTC28Q96AY4 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC19.95■□□□□ 0.78
TTC28Q96AY4 AC138894.3-201ENST00000603787 634 ntBASIC19.95■□□□□ 0.78
TTC28Q96AY4 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
TTC28Q96AY4 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
TTC28Q96AY4 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC19.94■□□□□ 0.78
TTC28Q96AY4 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TTC28Q96AY4 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
TTC28Q96AY4 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC19.94■□□□□ 0.78
TTC28Q96AY4 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TTC28Q96AY4 AC034232.1-201ENST00000506026 1064 ntBASIC19.94■□□□□ 0.78
TTC28Q96AY4 AF238378.1-201ENST00000526806 358 ntBASIC19.94■□□□□ 0.78
TTC28Q96AY4 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC19.94■□□□□ 0.78
TTC28Q96AY4 ABBA01031661.1-201ENST00000634362 1253 ntBASIC19.94■□□□□ 0.78
TTC28Q96AY4 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
TTC28Q96AY4 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
TTC28Q96AY4 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TTC28Q96AY4 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TTC28Q96AY4 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
TTC28Q96AY4 BET1L-206ENST00000486280 665 ntTSL 3 BASIC19.94■□□□□ 0.78
TTC28Q96AY4 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC19.94■□□□□ 0.78
TTC28Q96AY4 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC19.94■□□□□ 0.78
TTC28Q96AY4 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC19.94■□□□□ 0.78
TTC28Q96AY4 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC19.94■□□□□ 0.78
TTC28Q96AY4 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC19.93■□□□□ 0.78
TTC28Q96AY4 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC19.93■□□□□ 0.78
TTC28Q96AY4 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
TTC28Q96AY4 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC19.93■□□□□ 0.78
TTC28Q96AY4 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
TTC28Q96AY4 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
TTC28Q96AY4 HES2-202ENST00000377836 507 ntTSL 2 BASIC19.93■□□□□ 0.78
TTC28Q96AY4 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
TTC28Q96AY4 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC19.93■□□□□ 0.78
TTC28Q96AY4 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
TTC28Q96AY4 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC19.93■□□□□ 0.78
TTC28Q96AY4 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC19.93■□□□□ 0.78
TTC28Q96AY4 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC19.93■□□□□ 0.78
TTC28Q96AY4 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC19.93■□□□□ 0.78
TTC28Q96AY4 AC127496.7-201ENST00000625110 1798 ntBASIC19.93■□□□□ 0.78
TTC28Q96AY4 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
TTC28Q96AY4 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC19.93■□□□□ 0.78
TTC28Q96AY4 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC19.93■□□□□ 0.78
TTC28Q96AY4 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms