Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 B3GAT3P1-201ENST00000471720 806 ntBASIC6.02□□□□□ -1.45
SYNE1Q8NF91 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC6.02□□□□□ -1.45
SYNE1Q8NF91 ABBA01031674.1-201ENST00000635145 728 ntBASIC6.02□□□□□ -1.45
SYNE1Q8NF91 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC6.02□□□□□ -1.45
SYNE1Q8NF91 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
SYNE1Q8NF91 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC6.02□□□□□ -1.45
SYNE1Q8NF91 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC6.02□□□□□ -1.45
SYNE1Q8NF91 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 STAC-204ENST00000457375 1366 ntTSL 2 BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 PALM-208ENST00000592155 2272 ntTSL 4 BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 AC027702.1-201ENST00000563810 1770 ntBASIC6.01□□□□□ -1.45
SYNE1Q8NF91 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 TREX2-204ENST00000370212 861 ntTSL 5 BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 REXO1L10P-201ENST00000615707 1290 ntBASIC6.01□□□□□ -1.45
SYNE1Q8NF91 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 FEM1AP4-201ENST00000443167 1987 ntBASIC6.01□□□□□ -1.45
SYNE1Q8NF91 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
SYNE1Q8NF91 INGX-201ENST00000359239 846 ntBASIC6.01□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms