Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
SMC1BQ8NDV3 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
SMC1BQ8NDV3 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
SMC1BQ8NDV3 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC23.24■■□□□ 1.31
SMC1BQ8NDV3 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
SMC1BQ8NDV3 TFP1-202ENST00000475455 1573 ntBASIC23.24■■□□□ 1.31
SMC1BQ8NDV3 AC116351.2-201ENST00000606540 1585 ntBASIC23.24■■□□□ 1.31
SMC1BQ8NDV3 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
SMC1BQ8NDV3 AL590627.1-203ENST00000421194 1026 ntBASIC23.24■■□□□ 1.31
SMC1BQ8NDV3 HSD11B1L-205ENST00000422535 730 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
SMC1BQ8NDV3 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC23.24■■□□□ 1.31
SMC1BQ8NDV3 Z85996.1-201ENST00000494644 937 ntBASIC23.24■■□□□ 1.31
SMC1BQ8NDV3 PENK-208ENST00000523051 772 ntTSL 5 BASIC23.24■■□□□ 1.31
SMC1BQ8NDV3 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC23.24■■□□□ 1.31
SMC1BQ8NDV3 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC23.24■■□□□ 1.31
SMC1BQ8NDV3 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC23.24■■□□□ 1.31
SMC1BQ8NDV3 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC23.24■■□□□ 1.31
SMC1BQ8NDV3 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC23.24■■□□□ 1.31
SMC1BQ8NDV3 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
SMC1BQ8NDV3 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
SMC1BQ8NDV3 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC23.24■■□□□ 1.31
SMC1BQ8NDV3 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
SMC1BQ8NDV3 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC23.23■■□□□ 1.31
SMC1BQ8NDV3 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC23.23■■□□□ 1.31
SMC1BQ8NDV3 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC23.23■■□□□ 1.31
SMC1BQ8NDV3 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
SMC1BQ8NDV3 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
SMC1BQ8NDV3 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC23.23■■□□□ 1.31
SMC1BQ8NDV3 IL11-204ENST00000590625 1028 ntTSL 2 BASIC23.23■■□□□ 1.31
SMC1BQ8NDV3 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC23.23■■□□□ 1.31
SMC1BQ8NDV3 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC23.23■■□□□ 1.31
SMC1BQ8NDV3 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC23.23■■□□□ 1.31
SMC1BQ8NDV3 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
SMC1BQ8NDV3 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
SMC1BQ8NDV3 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC23.22■■□□□ 1.31
SMC1BQ8NDV3 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC23.22■■□□□ 1.31
SMC1BQ8NDV3 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC23.22■■□□□ 1.31
SMC1BQ8NDV3 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC23.22■■□□□ 1.31
SMC1BQ8NDV3 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC23.22■■□□□ 1.31
SMC1BQ8NDV3 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC23.22■■□□□ 1.31
SMC1BQ8NDV3 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC23.22■■□□□ 1.31
SMC1BQ8NDV3 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC23.22■■□□□ 1.31
SMC1BQ8NDV3 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
SMC1BQ8NDV3 MIR574-201ENST00000385209 96 ntBASIC23.22■■□□□ 1.31
SMC1BQ8NDV3 MRPL3P1-201ENST00000400109 1033 ntBASIC23.22■■□□□ 1.31
SMC1BQ8NDV3 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC23.22■■□□□ 1.31
SMC1BQ8NDV3 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC23.22■■□□□ 1.31
SMC1BQ8NDV3 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC23.22■■□□□ 1.31
SMC1BQ8NDV3 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
SMC1BQ8NDV3 GOLGA6L3-201ENST00000507199 1679 ntBASIC23.22■■□□□ 1.31
SMC1BQ8NDV3 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
SMC1BQ8NDV3 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC23.21■■□□□ 1.31
SMC1BQ8NDV3 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC23.21■■□□□ 1.31
SMC1BQ8NDV3 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC23.21■■□□□ 1.31
SMC1BQ8NDV3 AC092865.5-201ENST00000545435 363 ntBASIC23.21■■□□□ 1.31
SMC1BQ8NDV3 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC23.21■■□□□ 1.31
SMC1BQ8NDV3 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC23.21■■□□□ 1.31
SMC1BQ8NDV3 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC23.21■■□□□ 1.31
SMC1BQ8NDV3 NME4-212ENST00000621774 904 ntTSL 3 BASIC23.21■■□□□ 1.31
SMC1BQ8NDV3 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC23.21■■□□□ 1.31
SMC1BQ8NDV3 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC23.21■■□□□ 1.31
SMC1BQ8NDV3 AF228730.7-201ENST00000641842 219 ntBASIC23.21■■□□□ 1.31
SMC1BQ8NDV3 HLA-A-201ENST00000376802 1334 ntBASIC23.21■■□□□ 1.31
SMC1BQ8NDV3 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
SMC1BQ8NDV3 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC23.21■■□□□ 1.31
SMC1BQ8NDV3 KRT8P17-201ENST00000453110 1448 ntBASIC23.21■■□□□ 1.31
SMC1BQ8NDV3 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC23.21■■□□□ 1.31
SMC1BQ8NDV3 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC23.21■■□□□ 1.31
SMC1BQ8NDV3 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
SMC1BQ8NDV3 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC23.21■■□□□ 1.31
SMC1BQ8NDV3 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
SMC1BQ8NDV3 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
SMC1BQ8NDV3 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC23.21■■□□□ 1.31
SMC1BQ8NDV3 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
SMC1BQ8NDV3 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC23.21■■□□□ 1.31
SMC1BQ8NDV3 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC23.21■■□□□ 1.31
SMC1BQ8NDV3 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC23.21■■□□□ 1.31
SMC1BQ8NDV3 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.31
SMC1BQ8NDV3 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC23.2■■□□□ 1.3
SMC1BQ8NDV3 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
SMC1BQ8NDV3 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
SMC1BQ8NDV3 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
SMC1BQ8NDV3 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
SMC1BQ8NDV3 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC23.2■■□□□ 1.3
SMC1BQ8NDV3 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC23.2■■□□□ 1.3
SMC1BQ8NDV3 HMGN1P19-201ENST00000436976 333 ntBASIC23.2■■□□□ 1.3
SMC1BQ8NDV3 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC23.2■■□□□ 1.3
SMC1BQ8NDV3 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC23.2■■□□□ 1.3
SMC1BQ8NDV3 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC23.2■■□□□ 1.3
SMC1BQ8NDV3 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC23.2■■□□□ 1.3
SMC1BQ8NDV3 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
SMC1BQ8NDV3 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC23.19■■□□□ 1.3
SMC1BQ8NDV3 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
SMC1BQ8NDV3 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC23.19■■□□□ 1.3
SMC1BQ8NDV3 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
SMC1BQ8NDV3 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
SMC1BQ8NDV3 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC23.19■■□□□ 1.3
SMC1BQ8NDV3 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC23.19■■□□□ 1.3
SMC1BQ8NDV3 BMF-207ENST00000559701 630 ntTSL 3 BASIC23.19■■□□□ 1.3
SMC1BQ8NDV3 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms