Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
NPAS3Q8IXF0 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
NPAS3Q8IXF0 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.83
NPAS3Q8IXF0 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC20.27■□□□□ 0.83
NPAS3Q8IXF0 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC20.27■□□□□ 0.83
NPAS3Q8IXF0 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC20.26■□□□□ 0.83
NPAS3Q8IXF0 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
NPAS3Q8IXF0 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC20.26■□□□□ 0.83
NPAS3Q8IXF0 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
NPAS3Q8IXF0 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
NPAS3Q8IXF0 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
NPAS3Q8IXF0 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
NPAS3Q8IXF0 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC20.26■□□□□ 0.83
NPAS3Q8IXF0 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
NPAS3Q8IXF0 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
NPAS3Q8IXF0 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC20.26■□□□□ 0.83
NPAS3Q8IXF0 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC20.26■□□□□ 0.83
NPAS3Q8IXF0 GPX4-207ENST00000589115 812 ntTSL 2 BASIC20.26■□□□□ 0.83
NPAS3Q8IXF0 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
NPAS3Q8IXF0 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC20.26■□□□□ 0.83
NPAS3Q8IXF0 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
NPAS3Q8IXF0 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
NPAS3Q8IXF0 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
NPAS3Q8IXF0 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
NPAS3Q8IXF0 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
NPAS3Q8IXF0 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
NPAS3Q8IXF0 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
NPAS3Q8IXF0 KRT8P8-201ENST00000434750 1448 ntBASIC20.26■□□□□ 0.83
NPAS3Q8IXF0 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC20.26■□□□□ 0.83
NPAS3Q8IXF0 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
NPAS3Q8IXF0 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
NPAS3Q8IXF0 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC20.25■□□□□ 0.83
NPAS3Q8IXF0 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
NPAS3Q8IXF0 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
NPAS3Q8IXF0 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC20.25■□□□□ 0.83
NPAS3Q8IXF0 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
NPAS3Q8IXF0 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC20.25■□□□□ 0.83
NPAS3Q8IXF0 COPE-203ENST00000351079 907 ntTSL 2 BASIC20.25■□□□□ 0.83
NPAS3Q8IXF0 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
NPAS3Q8IXF0 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
NPAS3Q8IXF0 FAM8A6P-201ENST00000407496 1135 ntBASIC20.25■□□□□ 0.83
NPAS3Q8IXF0 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
NPAS3Q8IXF0 AC007663.1-201ENST00000438948 1240 ntBASIC20.25■□□□□ 0.83
NPAS3Q8IXF0 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC20.25■□□□□ 0.83
NPAS3Q8IXF0 AC010653.2-201ENST00000623505 997 ntBASIC20.25■□□□□ 0.83
NPAS3Q8IXF0 AL358472.4-201ENST00000633140 710 ntBASIC20.25■□□□□ 0.83
NPAS3Q8IXF0 MYC-208ENST00000641036 567 ntBASIC20.25■□□□□ 0.83
NPAS3Q8IXF0 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
NPAS3Q8IXF0 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
NPAS3Q8IXF0 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC20.25■□□□□ 0.83
NPAS3Q8IXF0 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
NPAS3Q8IXF0 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
NPAS3Q8IXF0 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC20.24■□□□□ 0.83
NPAS3Q8IXF0 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
NPAS3Q8IXF0 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NPAS3Q8IXF0 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NPAS3Q8IXF0 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
NPAS3Q8IXF0 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
NPAS3Q8IXF0 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC20.24■□□□□ 0.83
NPAS3Q8IXF0 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NPAS3Q8IXF0 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NPAS3Q8IXF0 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NPAS3Q8IXF0 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC20.24■□□□□ 0.83
NPAS3Q8IXF0 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
NPAS3Q8IXF0 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NPAS3Q8IXF0 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
NPAS3Q8IXF0 RNF152P1-201ENST00000397754 604 ntBASIC20.24■□□□□ 0.83
NPAS3Q8IXF0 ISCU-203ENST00000431221 799 ntTSL 2 BASIC20.24■□□□□ 0.83
NPAS3Q8IXF0 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC20.24■□□□□ 0.83
NPAS3Q8IXF0 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC20.24■□□□□ 0.83
NPAS3Q8IXF0 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
NPAS3Q8IXF0 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
NPAS3Q8IXF0 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC20.24■□□□□ 0.83
NPAS3Q8IXF0 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NPAS3Q8IXF0 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC20.24■□□□□ 0.83
NPAS3Q8IXF0 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
NPAS3Q8IXF0 AC092338.2-201ENST00000568827 1415 ntBASIC20.24■□□□□ 0.83
NPAS3Q8IXF0 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC20.24■□□□□ 0.83
NPAS3Q8IXF0 BX119927.1-201ENST00000636596 1552 ntBASIC20.24■□□□□ 0.83
NPAS3Q8IXF0 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
NPAS3Q8IXF0 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC20.23■□□□□ 0.83
NPAS3Q8IXF0 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC20.23■□□□□ 0.83
NPAS3Q8IXF0 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
NPAS3Q8IXF0 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC20.23■□□□□ 0.83
NPAS3Q8IXF0 DERL1-203ENST00000419562 918 ntTSL 2 BASIC20.23■□□□□ 0.83
NPAS3Q8IXF0 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC20.23■□□□□ 0.83
NPAS3Q8IXF0 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC20.23■□□□□ 0.83
NPAS3Q8IXF0 YBX1P2-201ENST00000489612 999 ntBASIC20.23■□□□□ 0.83
NPAS3Q8IXF0 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
NPAS3Q8IXF0 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC20.23■□□□□ 0.83
NPAS3Q8IXF0 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC20.23■□□□□ 0.83
NPAS3Q8IXF0 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
NPAS3Q8IXF0 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC20.23■□□□□ 0.83
NPAS3Q8IXF0 MED25-212ENST00000618715 1467 ntTSL 5 BASIC20.23■□□□□ 0.83
NPAS3Q8IXF0 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC20.23■□□□□ 0.83
NPAS3Q8IXF0 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
NPAS3Q8IXF0 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
NPAS3Q8IXF0 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
NPAS3Q8IXF0 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC20.22■□□□□ 0.83
NPAS3Q8IXF0 UPK3BP1-201ENST00000428678 509 ntBASIC20.22■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms