Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
VRK3Q8IV63 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
VRK3Q8IV63 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC19.13■□□□□ 0.65
VRK3Q8IV63 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC19.13■□□□□ 0.65
VRK3Q8IV63 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC19.13■□□□□ 0.65
VRK3Q8IV63 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC19.13■□□□□ 0.65
VRK3Q8IV63 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VRK3Q8IV63 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
VRK3Q8IV63 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC19.13■□□□□ 0.65
VRK3Q8IV63 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC19.13■□□□□ 0.65
VRK3Q8IV63 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC19.13■□□□□ 0.65
VRK3Q8IV63 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC19.13■□□□□ 0.65
VRK3Q8IV63 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
VRK3Q8IV63 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VRK3Q8IV63 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VRK3Q8IV63 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
VRK3Q8IV63 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC19.12■□□□□ 0.65
VRK3Q8IV63 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VRK3Q8IV63 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
VRK3Q8IV63 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VRK3Q8IV63 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
VRK3Q8IV63 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC19.12■□□□□ 0.65
VRK3Q8IV63 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC19.12■□□□□ 0.65
VRK3Q8IV63 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
VRK3Q8IV63 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC19.12■□□□□ 0.65
VRK3Q8IV63 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC19.12■□□□□ 0.65
VRK3Q8IV63 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
VRK3Q8IV63 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
VRK3Q8IV63 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC19.12■□□□□ 0.65
VRK3Q8IV63 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC19.12■□□□□ 0.65
VRK3Q8IV63 TUBB8P6-201ENST00000436895 1288 ntBASIC19.12■□□□□ 0.65
VRK3Q8IV63 TK2-204ENST00000525974 1178 ntTSL 2 BASIC19.12■□□□□ 0.65
VRK3Q8IV63 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC19.12■□□□□ 0.65
VRK3Q8IV63 RNF121-214ENST00000533380 870 ntTSL 3 BASIC19.12■□□□□ 0.65
VRK3Q8IV63 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
VRK3Q8IV63 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC19.12■□□□□ 0.65
VRK3Q8IV63 AC110285.5-201ENST00000611501 352 ntBASIC19.12■□□□□ 0.65
VRK3Q8IV63 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
VRK3Q8IV63 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
VRK3Q8IV63 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC19.12■□□□□ 0.65
VRK3Q8IV63 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC19.12■□□□□ 0.65
VRK3Q8IV63 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
VRK3Q8IV63 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
VRK3Q8IV63 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VRK3Q8IV63 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC19.11■□□□□ 0.65
VRK3Q8IV63 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
VRK3Q8IV63 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
VRK3Q8IV63 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
VRK3Q8IV63 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC19.11■□□□□ 0.65
VRK3Q8IV63 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
VRK3Q8IV63 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
VRK3Q8IV63 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
VRK3Q8IV63 RHOD-202ENST00000532559 538 ntTSL 3 BASIC19.11■□□□□ 0.65
VRK3Q8IV63 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC19.11■□□□□ 0.65
VRK3Q8IV63 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
VRK3Q8IV63 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
VRK3Q8IV63 AC007952.6-201ENST00000573168 2673 ntBASIC19.11■□□□□ 0.65
VRK3Q8IV63 AC003957.1-201ENST00000625108 2673 ntBASIC19.11■□□□□ 0.65
VRK3Q8IV63 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
VRK3Q8IV63 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC19.11■□□□□ 0.65
VRK3Q8IV63 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
VRK3Q8IV63 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VRK3Q8IV63 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
VRK3Q8IV63 TP73-202ENST00000354437 2140 ntTSL 5 BASIC19.1■□□□□ 0.65
VRK3Q8IV63 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VRK3Q8IV63 KRT8P8-201ENST00000434750 1448 ntBASIC19.1■□□□□ 0.65
VRK3Q8IV63 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
VRK3Q8IV63 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC19.1■□□□□ 0.65
VRK3Q8IV63 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC19.1■□□□□ 0.65
VRK3Q8IV63 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC19.1■□□□□ 0.65
VRK3Q8IV63 Z82202.1-201ENST00000623446 1880 ntBASIC19.1■□□□□ 0.65
VRK3Q8IV63 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC19.1■□□□□ 0.65
VRK3Q8IV63 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
VRK3Q8IV63 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VRK3Q8IV63 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VRK3Q8IV63 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VRK3Q8IV63 PEX7-202ENST00000367756 680 ntTSL 3 BASIC19.1■□□□□ 0.65
VRK3Q8IV63 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
VRK3Q8IV63 GCSHP5-201ENST00000443090 522 ntBASIC19.1■□□□□ 0.65
VRK3Q8IV63 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC19.1■□□□□ 0.65
VRK3Q8IV63 AC142381.4-202ENST00000563973 229 ntBASIC19.1■□□□□ 0.65
VRK3Q8IV63 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC19.1■□□□□ 0.65
VRK3Q8IV63 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC19.1■□□□□ 0.65
VRK3Q8IV63 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC19.1■□□□□ 0.65
VRK3Q8IV63 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC19.1■□□□□ 0.65
VRK3Q8IV63 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VRK3Q8IV63 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VRK3Q8IV63 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VRK3Q8IV63 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VRK3Q8IV63 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
VRK3Q8IV63 AC116562.4-201ENST00000641316 2276 ntBASIC19.09■□□□□ 0.65
VRK3Q8IV63 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
VRK3Q8IV63 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VRK3Q8IV63 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
VRK3Q8IV63 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
VRK3Q8IV63 AC093484.2-201ENST00000580996 2166 ntBASIC19.09■□□□□ 0.65
VRK3Q8IV63 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC19.09■□□□□ 0.65
VRK3Q8IV63 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
VRK3Q8IV63 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
VRK3Q8IV63 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC19.09■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms