Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
USP54Q70EL1 LINC01465-201ENST00000408887 1940 ntBASIC26.17■■□□□ 1.78
USP54Q70EL1 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC26.17■■□□□ 1.78
USP54Q70EL1 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
USP54Q70EL1 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
USP54Q70EL1 CD70-202ENST00000423145 881 ntTSL 2 BASIC26.17■■□□□ 1.78
USP54Q70EL1 COX11P1-201ENST00000489116 835 ntBASIC26.17■■□□□ 1.78
USP54Q70EL1 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC26.17■■□□□ 1.78
USP54Q70EL1 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC26.17■■□□□ 1.78
USP54Q70EL1 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
USP54Q70EL1 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC26.17■■□□□ 1.78
USP54Q70EL1 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
USP54Q70EL1 AL162377.1-201ENST00000618844 1793 ntBASIC26.16■■□□□ 1.78
USP54Q70EL1 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC26.16■■□□□ 1.78
USP54Q70EL1 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC26.16■■□□□ 1.78
USP54Q70EL1 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC26.16■■□□□ 1.78
USP54Q70EL1 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
USP54Q70EL1 AC139887.4-201ENST00000607877 719 ntBASIC26.16■■□□□ 1.78
USP54Q70EL1 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC26.16■■□□□ 1.78
USP54Q70EL1 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
USP54Q70EL1 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC26.16■■□□□ 1.78
USP54Q70EL1 PCCB-208ENST00000468777 1877 ntAPPRIS ALT2 TSL 3 BASIC26.16■■□□□ 1.78
USP54Q70EL1 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
USP54Q70EL1 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC26.16■■□□□ 1.78
USP54Q70EL1 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
USP54Q70EL1 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC26.15■■□□□ 1.78
USP54Q70EL1 BET1L-202ENST00000332865 533 ntTSL 5 BASIC26.15■■□□□ 1.78
USP54Q70EL1 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
USP54Q70EL1 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC26.15■■□□□ 1.78
USP54Q70EL1 COPS8-203ENST00000409334 794 ntTSL 5 BASIC26.15■■□□□ 1.78
USP54Q70EL1 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC26.15■■□□□ 1.78
USP54Q70EL1 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC26.15■■□□□ 1.78
USP54Q70EL1 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC26.15■■□□□ 1.78
USP54Q70EL1 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC26.15■■□□□ 1.78
USP54Q70EL1 AL358472.4-201ENST00000633140 710 ntBASIC26.15■■□□□ 1.78
USP54Q70EL1 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
USP54Q70EL1 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
USP54Q70EL1 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC26.15■■□□□ 1.78
USP54Q70EL1 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC26.15■■□□□ 1.78
USP54Q70EL1 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
USP54Q70EL1 C22orf39-205ENST00000542103 1523 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
USP54Q70EL1 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC26.15■■□□□ 1.78
USP54Q70EL1 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
USP54Q70EL1 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC26.15■■□□□ 1.78
USP54Q70EL1 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC26.15■■□□□ 1.78
USP54Q70EL1 ILF2-202ENST00000368681 726 ntTSL 2 BASIC26.15■■□□□ 1.78
USP54Q70EL1 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC26.15■■□□□ 1.78
USP54Q70EL1 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC26.15■■□□□ 1.78
USP54Q70EL1 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC26.15■■□□□ 1.78
USP54Q70EL1 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC26.15■■□□□ 1.78
USP54Q70EL1 AC116407.4-201ENST00000623319 1061 ntBASIC26.15■■□□□ 1.78
USP54Q70EL1 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
USP54Q70EL1 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
USP54Q70EL1 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC26.14■■□□□ 1.78
USP54Q70EL1 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
USP54Q70EL1 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC26.14■■□□□ 1.78
USP54Q70EL1 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC26.14■■□□□ 1.78
USP54Q70EL1 RNF152P1-201ENST00000397754 604 ntBASIC26.14■■□□□ 1.78
USP54Q70EL1 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC26.14■■□□□ 1.78
USP54Q70EL1 BX664615.1-201ENST00000443558 458 ntBASIC26.14■■□□□ 1.78
USP54Q70EL1 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC26.14■■□□□ 1.78
USP54Q70EL1 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC26.14■■□□□ 1.78
USP54Q70EL1 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC26.14■■□□□ 1.78
USP54Q70EL1 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.77
USP54Q70EL1 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.77
USP54Q70EL1 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC26.13■■□□□ 1.77
USP54Q70EL1 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
USP54Q70EL1 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC26.13■■□□□ 1.77
USP54Q70EL1 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC26.13■■□□□ 1.77
USP54Q70EL1 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
USP54Q70EL1 AL441883.1-201ENST00000566170 1045 ntBASIC26.13■■□□□ 1.77
USP54Q70EL1 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC26.13■■□□□ 1.77
USP54Q70EL1 METTL23-204ENST00000586752 904 ntTSL 2 BASIC26.13■■□□□ 1.77
USP54Q70EL1 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC26.13■■□□□ 1.77
USP54Q70EL1 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC26.13■■□□□ 1.77
USP54Q70EL1 AL691432.2-201ENST00000607222 2038 ntBASIC26.13■■□□□ 1.77
USP54Q70EL1 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
USP54Q70EL1 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
USP54Q70EL1 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC26.13■■□□□ 1.77
USP54Q70EL1 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
USP54Q70EL1 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC26.12■■□□□ 1.77
USP54Q70EL1 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
USP54Q70EL1 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
USP54Q70EL1 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
USP54Q70EL1 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
USP54Q70EL1 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC26.12■■□□□ 1.77
USP54Q70EL1 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC26.12■■□□□ 1.77
USP54Q70EL1 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
USP54Q70EL1 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC26.12■■□□□ 1.77
USP54Q70EL1 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC26.12■■□□□ 1.77
USP54Q70EL1 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
USP54Q70EL1 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC26.12■■□□□ 1.77
USP54Q70EL1 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC26.12■■□□□ 1.77
USP54Q70EL1 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC26.12■■□□□ 1.77
USP54Q70EL1 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC26.12■■□□□ 1.77
USP54Q70EL1 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC26.12■■□□□ 1.77
USP54Q70EL1 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC26.12■■□□□ 1.77
USP54Q70EL1 AL121956.5-201ENST00000625261 221 ntBASIC26.12■■□□□ 1.77
USP54Q70EL1 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
USP54Q70EL1 AL512408.1-201ENST00000569378 2000 ntBASIC26.12■■□□□ 1.77
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms