Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC21.12■□□□□ 0.97
KRT39Q6A163 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
KRT39Q6A163 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
KRT39Q6A163 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC21.12■□□□□ 0.97
KRT39Q6A163 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC21.12■□□□□ 0.97
KRT39Q6A163 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
KRT39Q6A163 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
KRT39Q6A163 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
KRT39Q6A163 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
KRT39Q6A163 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC21.12■□□□□ 0.97
KRT39Q6A163 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC21.12■□□□□ 0.97
KRT39Q6A163 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC21.12■□□□□ 0.97
KRT39Q6A163 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
KRT39Q6A163 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC21.12■□□□□ 0.97
KRT39Q6A163 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC21.11■□□□□ 0.97
KRT39Q6A163 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
KRT39Q6A163 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
KRT39Q6A163 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
KRT39Q6A163 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC21.11■□□□□ 0.97
KRT39Q6A163 TMEM91-209ENST00000539627 1843 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
KRT39Q6A163 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC21.11■□□□□ 0.97
KRT39Q6A163 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC21.11■□□□□ 0.97
KRT39Q6A163 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
KRT39Q6A163 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
KRT39Q6A163 TUBB8P6-201ENST00000436895 1288 ntBASIC21.11■□□□□ 0.97
KRT39Q6A163 F2R-202ENST00000505600 442 ntTSL 2 BASIC21.11■□□□□ 0.97
KRT39Q6A163 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC21.11■□□□□ 0.97
KRT39Q6A163 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC21.11■□□□□ 0.97
KRT39Q6A163 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC21.11■□□□□ 0.97
KRT39Q6A163 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
KRT39Q6A163 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC21.11■□□□□ 0.97
KRT39Q6A163 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
KRT39Q6A163 NBPF21P-201ENST00000425093 1451 ntBASIC21.11■□□□□ 0.97
KRT39Q6A163 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC21.11■□□□□ 0.97
KRT39Q6A163 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC21.11■□□□□ 0.97
KRT39Q6A163 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC21.11■□□□□ 0.97
KRT39Q6A163 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
KRT39Q6A163 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC21.11■□□□□ 0.97
KRT39Q6A163 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
KRT39Q6A163 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
KRT39Q6A163 AC093484.2-201ENST00000580996 2166 ntBASIC21.1■□□□□ 0.97
KRT39Q6A163 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC21.1■□□□□ 0.97
KRT39Q6A163 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
KRT39Q6A163 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
KRT39Q6A163 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC21.1■□□□□ 0.97
KRT39Q6A163 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC21.1■□□□□ 0.97
KRT39Q6A163 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
KRT39Q6A163 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
KRT39Q6A163 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
KRT39Q6A163 AC128676.1-201ENST00000454392 318 ntBASIC21.1■□□□□ 0.97
KRT39Q6A163 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC21.1■□□□□ 0.97
KRT39Q6A163 NME1-207ENST00000480143 964 ntTSL 2 BASIC21.1■□□□□ 0.97
KRT39Q6A163 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC21.1■□□□□ 0.97
KRT39Q6A163 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC21.1■□□□□ 0.97
KRT39Q6A163 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC21.1■□□□□ 0.97
KRT39Q6A163 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC21.1■□□□□ 0.97
KRT39Q6A163 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
KRT39Q6A163 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
KRT39Q6A163 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
KRT39Q6A163 KRT8P8-201ENST00000434750 1448 ntBASIC21.1■□□□□ 0.97
KRT39Q6A163 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
KRT39Q6A163 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC21.1■□□□□ 0.97
KRT39Q6A163 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC21.09■□□□□ 0.97
KRT39Q6A163 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC21.09■□□□□ 0.97
KRT39Q6A163 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
KRT39Q6A163 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
KRT39Q6A163 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
KRT39Q6A163 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
KRT39Q6A163 TP73-202ENST00000354437 2140 ntTSL 5 BASIC21.09■□□□□ 0.97
KRT39Q6A163 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
KRT39Q6A163 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
KRT39Q6A163 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC21.09■□□□□ 0.97
KRT39Q6A163 RHOD-202ENST00000532559 538 ntTSL 3 BASIC21.09■□□□□ 0.97
KRT39Q6A163 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
KRT39Q6A163 RN7SL471P-201ENST00000580476 299 ntBASIC21.09■□□□□ 0.97
KRT39Q6A163 AL023875.1-201ENST00000640777 796 ntBASIC21.09■□□□□ 0.97
KRT39Q6A163 AC116562.4-201ENST00000641316 2276 ntBASIC21.09■□□□□ 0.97
KRT39Q6A163 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
KRT39Q6A163 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
KRT39Q6A163 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
KRT39Q6A163 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
KRT39Q6A163 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
KRT39Q6A163 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
KRT39Q6A163 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
KRT39Q6A163 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC21.08■□□□□ 0.97
KRT39Q6A163 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
KRT39Q6A163 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC21.08■□□□□ 0.97
KRT39Q6A163 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC21.08■□□□□ 0.97
KRT39Q6A163 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
KRT39Q6A163 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
KRT39Q6A163 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
KRT39Q6A163 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
KRT39Q6A163 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC21.08■□□□□ 0.97
KRT39Q6A163 FAM201B-201ENST00000458407 597 ntBASIC21.08■□□□□ 0.97
KRT39Q6A163 AMACR-206ENST00000502637 1598 ntTSL 5 BASIC21.08■□□□□ 0.97
KRT39Q6A163 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC21.08■□□□□ 0.97
KRT39Q6A163 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC21.08■□□□□ 0.97
KRT39Q6A163 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC21.08■□□□□ 0.97
KRT39Q6A163 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
KRT39Q6A163 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC21.08■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms