Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
CCDC88AQ3V6T2 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
CCDC88AQ3V6T2 ME2-216ENST00000639850 2331 ntTSL 5 BASIC24.02■■□□□ 1.44
CCDC88AQ3V6T2 TUBB8P6-201ENST00000436895 1288 ntBASIC24.02■■□□□ 1.44
CCDC88AQ3V6T2 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC24.02■■□□□ 1.44
CCDC88AQ3V6T2 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC24.02■■□□□ 1.44
CCDC88AQ3V6T2 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
CCDC88AQ3V6T2 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC24.02■■□□□ 1.44
CCDC88AQ3V6T2 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
CCDC88AQ3V6T2 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC24.02■■□□□ 1.43
CCDC88AQ3V6T2 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC24.01■■□□□ 1.43
CCDC88AQ3V6T2 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC24.01■■□□□ 1.43
CCDC88AQ3V6T2 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC24.01■■□□□ 1.43
CCDC88AQ3V6T2 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC24.01■■□□□ 1.43
CCDC88AQ3V6T2 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
CCDC88AQ3V6T2 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
CCDC88AQ3V6T2 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC24.01■■□□□ 1.43
CCDC88AQ3V6T2 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC24.01■■□□□ 1.43
CCDC88AQ3V6T2 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC24.01■■□□□ 1.43
CCDC88AQ3V6T2 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC24.01■■□□□ 1.43
CCDC88AQ3V6T2 NDUFV2-AS1-203ENST00000608008 779 ntBASIC24.01■■□□□ 1.43
CCDC88AQ3V6T2 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC24.01■■□□□ 1.43
CCDC88AQ3V6T2 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
CCDC88AQ3V6T2 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
CCDC88AQ3V6T2 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
CCDC88AQ3V6T2 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC24.01■■□□□ 1.43
CCDC88AQ3V6T2 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC24.01■■□□□ 1.43
CCDC88AQ3V6T2 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC24.01■■□□□ 1.43
CCDC88AQ3V6T2 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC24.01■■□□□ 1.43
CCDC88AQ3V6T2 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC24■■□□□ 1.43
CCDC88AQ3V6T2 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
CCDC88AQ3V6T2 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC24■■□□□ 1.43
CCDC88AQ3V6T2 KRT18P16-201ENST00000510337 1294 ntBASIC24■■□□□ 1.43
CCDC88AQ3V6T2 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC24■■□□□ 1.43
CCDC88AQ3V6T2 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC24■■□□□ 1.43
CCDC88AQ3V6T2 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC24■■□□□ 1.43
CCDC88AQ3V6T2 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC24■■□□□ 1.43
CCDC88AQ3V6T2 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC24■■□□□ 1.43
CCDC88AQ3V6T2 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC24■■□□□ 1.43
CCDC88AQ3V6T2 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC24■■□□□ 1.43
CCDC88AQ3V6T2 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC24■■□□□ 1.43
CCDC88AQ3V6T2 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC24■■□□□ 1.43
CCDC88AQ3V6T2 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC24■■□□□ 1.43
CCDC88AQ3V6T2 HLA-G-202ENST00000376815 851 ntBASIC24■■□□□ 1.43
CCDC88AQ3V6T2 HLA-G-203ENST00000376818 1127 ntBASIC24■■□□□ 1.43
CCDC88AQ3V6T2 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC24■■□□□ 1.43
CCDC88AQ3V6T2 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC24■■□□□ 1.43
CCDC88AQ3V6T2 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC24■■□□□ 1.43
CCDC88AQ3V6T2 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC24■■□□□ 1.43
CCDC88AQ3V6T2 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC24■■□□□ 1.43
CCDC88AQ3V6T2 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC24■■□□□ 1.43
CCDC88AQ3V6T2 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC24■■□□□ 1.43
CCDC88AQ3V6T2 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC23.99■■□□□ 1.43
CCDC88AQ3V6T2 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC23.99■■□□□ 1.43
CCDC88AQ3V6T2 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
CCDC88AQ3V6T2 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
CCDC88AQ3V6T2 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC23.99■■□□□ 1.43
CCDC88AQ3V6T2 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC23.99■■□□□ 1.43
CCDC88AQ3V6T2 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC23.99■■□□□ 1.43
CCDC88AQ3V6T2 ETFA-216ENST00000560726 942 ntTSL 3 BASIC23.99■■□□□ 1.43
CCDC88AQ3V6T2 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC23.99■■□□□ 1.43
CCDC88AQ3V6T2 PRR29-207ENST00000580752 458 ntTSL 3 BASIC23.99■■□□□ 1.43
CCDC88AQ3V6T2 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC23.99■■□□□ 1.43
CCDC88AQ3V6T2 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC23.99■■□□□ 1.43
CCDC88AQ3V6T2 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
CCDC88AQ3V6T2 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC23.99■■□□□ 1.43
CCDC88AQ3V6T2 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC23.99■■□□□ 1.43
CCDC88AQ3V6T2 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC23.99■■□□□ 1.43
CCDC88AQ3V6T2 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC23.99■■□□□ 1.43
CCDC88AQ3V6T2 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC23.99■■□□□ 1.43
CCDC88AQ3V6T2 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC23.99■■□□□ 1.43
CCDC88AQ3V6T2 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
CCDC88AQ3V6T2 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
CCDC88AQ3V6T2 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC23.98■■□□□ 1.43
CCDC88AQ3V6T2 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC23.98■■□□□ 1.43
CCDC88AQ3V6T2 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC23.98■■□□□ 1.43
CCDC88AQ3V6T2 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC23.98■■□□□ 1.43
CCDC88AQ3V6T2 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC23.98■■□□□ 1.43
CCDC88AQ3V6T2 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC23.98■■□□□ 1.43
CCDC88AQ3V6T2 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
CCDC88AQ3V6T2 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC23.98■■□□□ 1.43
CCDC88AQ3V6T2 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
CCDC88AQ3V6T2 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC23.98■■□□□ 1.43
CCDC88AQ3V6T2 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
CCDC88AQ3V6T2 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC23.98■■□□□ 1.43
CCDC88AQ3V6T2 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC23.98■■□□□ 1.43
CCDC88AQ3V6T2 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC23.98■■□□□ 1.43
CCDC88AQ3V6T2 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
CCDC88AQ3V6T2 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
CCDC88AQ3V6T2 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC23.98■■□□□ 1.43
CCDC88AQ3V6T2 VENTXP5-201ENST00000523979 775 ntBASIC23.98■■□□□ 1.43
CCDC88AQ3V6T2 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC23.98■■□□□ 1.43
CCDC88AQ3V6T2 RN7SL510P-201ENST00000581311 263 ntBASIC23.98■■□□□ 1.43
CCDC88AQ3V6T2 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.43
CCDC88AQ3V6T2 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC23.98■■□□□ 1.43
CCDC88AQ3V6T2 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC23.98■■□□□ 1.43
CCDC88AQ3V6T2 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC23.98■■□□□ 1.43
CCDC88AQ3V6T2 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC23.98■■□□□ 1.43
CCDC88AQ3V6T2 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC23.97■■□□□ 1.43
CCDC88AQ3V6T2 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC23.97■■□□□ 1.43
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms