Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
PTCHD3Q3KNS1 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
PTCHD3Q3KNS1 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
PTCHD3Q3KNS1 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
PTCHD3Q3KNS1 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC19.1■□□□□ 0.65
PTCHD3Q3KNS1 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
PTCHD3Q3KNS1 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC19.1■□□□□ 0.65
PTCHD3Q3KNS1 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC19.1■□□□□ 0.65
PTCHD3Q3KNS1 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC19.1■□□□□ 0.65
PTCHD3Q3KNS1 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
PTCHD3Q3KNS1 MME-217ENST00000616757 1315 ntTSL 5 BASIC19.1■□□□□ 0.65
PTCHD3Q3KNS1 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
PTCHD3Q3KNS1 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC19.1■□□□□ 0.65
PTCHD3Q3KNS1 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
PTCHD3Q3KNS1 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
PTCHD3Q3KNS1 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC19.1■□□□□ 0.65
PTCHD3Q3KNS1 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
PTCHD3Q3KNS1 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC19.1■□□□□ 0.65
PTCHD3Q3KNS1 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC19.1■□□□□ 0.65
PTCHD3Q3KNS1 UBE2SP1-201ENST00000450587 669 ntBASIC19.1■□□□□ 0.65
PTCHD3Q3KNS1 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC19.1■□□□□ 0.65
PTCHD3Q3KNS1 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
PTCHD3Q3KNS1 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
PTCHD3Q3KNS1 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC19.1■□□□□ 0.65
PTCHD3Q3KNS1 AC120498.8-201ENST00000614275 531 ntBASIC19.1■□□□□ 0.65
PTCHD3Q3KNS1 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC19.1■□□□□ 0.65
PTCHD3Q3KNS1 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
PTCHD3Q3KNS1 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC19.1■□□□□ 0.65
PTCHD3Q3KNS1 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
PTCHD3Q3KNS1 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
PTCHD3Q3KNS1 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
PTCHD3Q3KNS1 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
PTCHD3Q3KNS1 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC19.1■□□□□ 0.65
PTCHD3Q3KNS1 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
PTCHD3Q3KNS1 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
PTCHD3Q3KNS1 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
PTCHD3Q3KNS1 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
PTCHD3Q3KNS1 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
PTCHD3Q3KNS1 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC19.09■□□□□ 0.65
PTCHD3Q3KNS1 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
PTCHD3Q3KNS1 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
PTCHD3Q3KNS1 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
PTCHD3Q3KNS1 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC19.09■□□□□ 0.65
PTCHD3Q3KNS1 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
PTCHD3Q3KNS1 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
PTCHD3Q3KNS1 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC19.09■□□□□ 0.65
PTCHD3Q3KNS1 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
PTCHD3Q3KNS1 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC19.09■□□□□ 0.65
PTCHD3Q3KNS1 AC008550.1-201ENST00000511500 884 ntBASIC19.09■□□□□ 0.65
PTCHD3Q3KNS1 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC19.09■□□□□ 0.65
PTCHD3Q3KNS1 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC19.09■□□□□ 0.65
PTCHD3Q3KNS1 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
PTCHD3Q3KNS1 SPIB-206ENST00000596074 847 ntTSL 2 BASIC19.09■□□□□ 0.65
PTCHD3Q3KNS1 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC19.09■□□□□ 0.65
PTCHD3Q3KNS1 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC19.09■□□□□ 0.65
PTCHD3Q3KNS1 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC19.09■□□□□ 0.65
PTCHD3Q3KNS1 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC19.09■□□□□ 0.65
PTCHD3Q3KNS1 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC19.09■□□□□ 0.65
PTCHD3Q3KNS1 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
PTCHD3Q3KNS1 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
PTCHD3Q3KNS1 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
PTCHD3Q3KNS1 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
PTCHD3Q3KNS1 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC19.09■□□□□ 0.65
PTCHD3Q3KNS1 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
PTCHD3Q3KNS1 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
PTCHD3Q3KNS1 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
PTCHD3Q3KNS1 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.65
PTCHD3Q3KNS1 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
PTCHD3Q3KNS1 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC19.08■□□□□ 0.65
PTCHD3Q3KNS1 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
PTCHD3Q3KNS1 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
PTCHD3Q3KNS1 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
PTCHD3Q3KNS1 AC116562.4-201ENST00000641316 2276 ntBASIC19.08■□□□□ 0.65
PTCHD3Q3KNS1 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC19.08■□□□□ 0.65
PTCHD3Q3KNS1 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.65
PTCHD3Q3KNS1 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
PTCHD3Q3KNS1 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
PTCHD3Q3KNS1 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
PTCHD3Q3KNS1 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
PTCHD3Q3KNS1 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
PTCHD3Q3KNS1 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
PTCHD3Q3KNS1 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC19.08■□□□□ 0.64
PTCHD3Q3KNS1 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC19.08■□□□□ 0.64
PTCHD3Q3KNS1 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
PTCHD3Q3KNS1 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC19.08■□□□□ 0.64
PTCHD3Q3KNS1 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
PTCHD3Q3KNS1 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC19.08■□□□□ 0.64
PTCHD3Q3KNS1 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC19.08■□□□□ 0.64
PTCHD3Q3KNS1 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC19.08■□□□□ 0.64
PTCHD3Q3KNS1 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
PTCHD3Q3KNS1 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.08■□□□□ 0.64
PTCHD3Q3KNS1 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
PTCHD3Q3KNS1 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC19.08■□□□□ 0.64
PTCHD3Q3KNS1 MTX1-201ENST00000316721 1441 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
PTCHD3Q3KNS1 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
PTCHD3Q3KNS1 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
PTCHD3Q3KNS1 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
PTCHD3Q3KNS1 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.64
PTCHD3Q3KNS1 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
PTCHD3Q3KNS1 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms