Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC18.12■□□□□ 0.49
RNF4P78317 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC18.12■□□□□ 0.49
RNF4P78317 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC18.12■□□□□ 0.49
RNF4P78317 AP002982.1-201ENST00000492365 877 ntBASIC18.12■□□□□ 0.49
RNF4P78317 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC18.12■□□□□ 0.49
RNF4P78317 AL353708.3-201ENST00000610272 989 ntBASIC18.12■□□□□ 0.49
RNF4P78317 AL049637.2-201ENST00000641778 930 ntBASIC18.12■□□□□ 0.49
RNF4P78317 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RNF4P78317 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC18.12■□□□□ 0.49
RNF4P78317 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC18.12■□□□□ 0.49
RNF4P78317 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
RNF4P78317 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC18.12■□□□□ 0.49
RNF4P78317 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
RNF4P78317 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
RNF4P78317 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
RNF4P78317 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
RNF4P78317 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
RNF4P78317 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
RNF4P78317 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
RNF4P78317 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC18.11■□□□□ 0.49
RNF4P78317 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RNF4P78317 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC18.11■□□□□ 0.49
RNF4P78317 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
RNF4P78317 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RNF4P78317 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC18.11■□□□□ 0.49
RNF4P78317 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RNF4P78317 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
RNF4P78317 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC18.11■□□□□ 0.49
RNF4P78317 FDX2-207ENST00000494368 584 ntTSL 4 BASIC18.11■□□□□ 0.49
RNF4P78317 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
RNF4P78317 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RNF4P78317 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC18.11■□□□□ 0.49
RNF4P78317 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC18.11■□□□□ 0.49
RNF4P78317 RPS15-203ENST00000586096 570 ntTSL 2 BASIC18.11■□□□□ 0.49
RNF4P78317 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RNF4P78317 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
RNF4P78317 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
RNF4P78317 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
RNF4P78317 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RNF4P78317 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC18.11■□□□□ 0.49
RNF4P78317 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
RNF4P78317 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RNF4P78317 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC18.11■□□□□ 0.49
RNF4P78317 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RNF4P78317 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
RNF4P78317 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
RNF4P78317 PCDHAC2-203ENST00000615316 3011 ntBASIC18.1■□□□□ 0.49
RNF4P78317 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
RNF4P78317 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC18.1■□□□□ 0.49
RNF4P78317 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC18.1■□□□□ 0.49
RNF4P78317 VSTM2B-201ENST00000335523 1488 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
RNF4P78317 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
RNF4P78317 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC18.1■□□□□ 0.49
RNF4P78317 KRT8P8-201ENST00000434750 1448 ntBASIC18.1■□□□□ 0.49
RNF4P78317 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC18.1■□□□□ 0.49
RNF4P78317 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RNF4P78317 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RNF4P78317 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
RNF4P78317 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC18.1■□□□□ 0.49
RNF4P78317 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC18.1■□□□□ 0.49
RNF4P78317 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
RNF4P78317 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC18.1■□□□□ 0.49
RNF4P78317 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RNF4P78317 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RNF4P78317 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RNF4P78317 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC18.1■□□□□ 0.49
RNF4P78317 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RNF4P78317 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
RNF4P78317 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
RNF4P78317 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
RNF4P78317 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC18.09■□□□□ 0.49
RNF4P78317 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
RNF4P78317 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC18.09■□□□□ 0.49
RNF4P78317 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
RNF4P78317 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
RNF4P78317 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
RNF4P78317 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC18.09■□□□□ 0.49
RNF4P78317 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
RNF4P78317 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
RNF4P78317 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
RNF4P78317 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
RNF4P78317 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
RNF4P78317 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
RNF4P78317 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC18.09■□□□□ 0.49
RNF4P78317 NIFKP9-201ENST00000419265 221 ntBASIC18.09■□□□□ 0.49
RNF4P78317 SAPCD2P4-201ENST00000424595 1171 ntBASIC18.09■□□□□ 0.49
RNF4P78317 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC18.09■□□□□ 0.49
RNF4P78317 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
RNF4P78317 AC073195.1-201ENST00000607241 877 ntBASIC18.09■□□□□ 0.49
RNF4P78317 AC113410.3-201ENST00000623366 203 ntBASIC18.09■□□□□ 0.49
RNF4P78317 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
RNF4P78317 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
RNF4P78317 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
RNF4P78317 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
RNF4P78317 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
RNF4P78317 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
RNF4P78317 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC18.08■□□□□ 0.49
RNF4P78317 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC18.08■□□□□ 0.49
RNF4P78317 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.49
RNF4P78317 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC18.08■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 66.8 ms