Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC20.14■□□□□ 0.81
NEK3P51956 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC20.14■□□□□ 0.81
NEK3P51956 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC20.14■□□□□ 0.81
NEK3P51956 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC20.14■□□□□ 0.81
NEK3P51956 RHOD-202ENST00000532559 538 ntTSL 3 BASIC20.14■□□□□ 0.81
NEK3P51956 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
NEK3P51956 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC20.14■□□□□ 0.81
NEK3P51956 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC20.14■□□□□ 0.81
NEK3P51956 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC20.14■□□□□ 0.81
NEK3P51956 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC20.14■□□□□ 0.81
NEK3P51956 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
NEK3P51956 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
NEK3P51956 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
NEK3P51956 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
NEK3P51956 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
NEK3P51956 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
NEK3P51956 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC20.13■□□□□ 0.81
NEK3P51956 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC20.13■□□□□ 0.81
NEK3P51956 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
NEK3P51956 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
NEK3P51956 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
NEK3P51956 ISG20-202ENST00000379224 540 ntTSL 3 BASIC20.13■□□□□ 0.81
NEK3P51956 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC20.13■□□□□ 0.81
NEK3P51956 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC20.13■□□□□ 0.81
NEK3P51956 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC20.13■□□□□ 0.81
NEK3P51956 AL031963.3-201ENST00000606441 850 ntBASIC20.13■□□□□ 0.81
NEK3P51956 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
NEK3P51956 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
NEK3P51956 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
NEK3P51956 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC20.13■□□□□ 0.81
NEK3P51956 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC20.12■□□□□ 0.81
NEK3P51956 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC20.12■□□□□ 0.81
NEK3P51956 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
NEK3P51956 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
NEK3P51956 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
NEK3P51956 KRT8P20-201ENST00000423953 1409 ntBASIC20.12■□□□□ 0.81
NEK3P51956 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC20.12■□□□□ 0.81
NEK3P51956 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
NEK3P51956 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
NEK3P51956 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC20.12■□□□□ 0.81
NEK3P51956 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
NEK3P51956 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
NEK3P51956 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
NEK3P51956 AC239809.2-201ENST00000415381 517 ntBASIC20.12■□□□□ 0.81
NEK3P51956 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC20.12■□□□□ 0.81
NEK3P51956 USP36-216ENST00000589424 970 ntTSL 5 BASIC20.12■□□□□ 0.81
NEK3P51956 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
NEK3P51956 AL023875.1-201ENST00000640777 796 ntBASIC20.12■□□□□ 0.81
NEK3P51956 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
NEK3P51956 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
NEK3P51956 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
NEK3P51956 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC20.12■□□□□ 0.81
NEK3P51956 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
NEK3P51956 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
NEK3P51956 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
NEK3P51956 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
NEK3P51956 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
NEK3P51956 AC005332.7-201ENST00000614046 2005 ntBASIC20.12■□□□□ 0.81
NEK3P51956 BX119927.1-201ENST00000636596 1552 ntBASIC20.12■□□□□ 0.81
NEK3P51956 AP000974.1-201ENST00000623909 2387 ntBASIC20.12■□□□□ 0.81
NEK3P51956 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC20.12■□□□□ 0.81
NEK3P51956 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC20.12■□□□□ 0.81
NEK3P51956 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
NEK3P51956 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
NEK3P51956 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC20.11■□□□□ 0.81
NEK3P51956 MME-217ENST00000616757 1315 ntTSL 5 BASIC20.11■□□□□ 0.81
NEK3P51956 DPP3P2-201ENST00000416030 1696 ntBASIC20.11■□□□□ 0.81
NEK3P51956 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC20.11■□□□□ 0.81
NEK3P51956 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC20.11■□□□□ 0.81
NEK3P51956 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
NEK3P51956 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC20.11■□□□□ 0.81
NEK3P51956 LY6E-205ENST00000519611 635 ntTSL 3 BASIC20.11■□□□□ 0.81
NEK3P51956 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC20.11■□□□□ 0.81
NEK3P51956 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC20.11■□□□□ 0.81
NEK3P51956 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC20.11■□□□□ 0.81
NEK3P51956 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC20.11■□□□□ 0.81
NEK3P51956 SPIB-206ENST00000596074 847 ntTSL 2 BASIC20.11■□□□□ 0.81
NEK3P51956 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC20.11■□□□□ 0.81
NEK3P51956 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
NEK3P51956 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
NEK3P51956 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC20.11■□□□□ 0.81
NEK3P51956 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
NEK3P51956 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC20.11■□□□□ 0.81
NEK3P51956 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC20.11■□□□□ 0.81
NEK3P51956 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
NEK3P51956 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
NEK3P51956 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
NEK3P51956 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
NEK3P51956 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
NEK3P51956 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
NEK3P51956 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
NEK3P51956 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
NEK3P51956 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC20.1■□□□□ 0.81
NEK3P51956 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
NEK3P51956 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC20.1■□□□□ 0.81
NEK3P51956 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
NEK3P51956 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
NEK3P51956 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
NEK3P51956 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC20.1■□□□□ 0.81
NEK3P51956 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms