Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC20.35■□□□□ 0.85
PTPN9P43378 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PTPN9P43378 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PTPN9P43378 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PTPN9P43378 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
PTPN9P43378 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PTPN9P43378 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PTPN9P43378 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PTPN9P43378 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
PTPN9P43378 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
PTPN9P43378 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
PTPN9P43378 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
PTPN9P43378 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
PTPN9P43378 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC20.34■□□□□ 0.85
PTPN9P43378 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PTPN9P43378 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
PTPN9P43378 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC20.34■□□□□ 0.85
PTPN9P43378 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PTPN9P43378 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
PTPN9P43378 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PTPN9P43378 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PTPN9P43378 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
PTPN9P43378 KRASP1-201ENST00000407852 552 ntBASIC20.34■□□□□ 0.85
PTPN9P43378 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC20.34■□□□□ 0.85
PTPN9P43378 AC004264.1-201ENST00000608354 794 ntBASIC20.34■□□□□ 0.85
PTPN9P43378 AC124016.1-201ENST00000609552 612 ntBASIC20.34■□□□□ 0.85
PTPN9P43378 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
PTPN9P43378 ITM2C-210ENST00000620962 501 ntBASIC20.34■□□□□ 0.85
PTPN9P43378 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC20.34■□□□□ 0.85
PTPN9P43378 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC20.34■□□□□ 0.85
PTPN9P43378 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC20.34■□□□□ 0.85
PTPN9P43378 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC20.34■□□□□ 0.85
PTPN9P43378 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PTPN9P43378 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
PTPN9P43378 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC20.34■□□□□ 0.85
PTPN9P43378 AC093484.2-201ENST00000580996 2166 ntBASIC20.34■□□□□ 0.85
PTPN9P43378 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
PTPN9P43378 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
PTPN9P43378 Z82202.1-201ENST00000623446 1880 ntBASIC20.33■□□□□ 0.85
PTPN9P43378 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
PTPN9P43378 GLI4-202ENST00000344692 1012 ntTSL 2 BASIC20.33■□□□□ 0.85
PTPN9P43378 ISG20-202ENST00000379224 540 ntTSL 3 BASIC20.33■□□□□ 0.85
PTPN9P43378 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC20.33■□□□□ 0.85
PTPN9P43378 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC20.33■□□□□ 0.85
PTPN9P43378 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC20.33■□□□□ 0.85
PTPN9P43378 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC20.33■□□□□ 0.85
PTPN9P43378 MMD2-204ENST00000612910 778 ntTSL 5 BASIC20.33■□□□□ 0.85
PTPN9P43378 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC20.33■□□□□ 0.85
PTPN9P43378 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC20.33■□□□□ 0.84
PTPN9P43378 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.84
PTPN9P43378 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
PTPN9P43378 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
PTPN9P43378 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
PTPN9P43378 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
PTPN9P43378 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC20.33■□□□□ 0.84
PTPN9P43378 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.84
PTPN9P43378 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
PTPN9P43378 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC20.33■□□□□ 0.84
PTPN9P43378 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PTPN9P43378 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
PTPN9P43378 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
PTPN9P43378 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PTPN9P43378 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
PTPN9P43378 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC20.32■□□□□ 0.84
PTPN9P43378 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
PTPN9P43378 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
PTPN9P43378 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
PTPN9P43378 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
PTPN9P43378 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC20.32■□□□□ 0.84
PTPN9P43378 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PTPN9P43378 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PTPN9P43378 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
PTPN9P43378 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
PTPN9P43378 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC20.32■□□□□ 0.84
PTPN9P43378 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
PTPN9P43378 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PTPN9P43378 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC20.31■□□□□ 0.84
PTPN9P43378 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
PTPN9P43378 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC20.31■□□□□ 0.84
PTPN9P43378 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PTPN9P43378 ZNF815P-204ENST00000434898 1737 ntBASIC20.31■□□□□ 0.84
PTPN9P43378 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
PTPN9P43378 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
PTPN9P43378 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
PTPN9P43378 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
PTPN9P43378 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
PTPN9P43378 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC20.31■□□□□ 0.84
PTPN9P43378 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC20.31■□□□□ 0.84
PTPN9P43378 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC20.31■□□□□ 0.84
PTPN9P43378 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC20.31■□□□□ 0.84
PTPN9P43378 IRX5-204ENST00000560154 879 ntTSL 5 BASIC20.31■□□□□ 0.84
PTPN9P43378 AC110285.5-201ENST00000611501 352 ntBASIC20.31■□□□□ 0.84
PTPN9P43378 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
PTPN9P43378 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
PTPN9P43378 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
PTPN9P43378 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
PTPN9P43378 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
PTPN9P43378 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PTPN9P43378 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PTPN9P43378 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms