Protein–RNA interactions for Protein: P41002

CCNF, Cyclin-F, humanhuman

Predictions only

Length 786 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNFP41002 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
CCNFP41002 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCNFP41002 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CCNFP41002 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
CCNFP41002 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCNFP41002 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCNFP41002 LRWD1-201ENST00000292616 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCNFP41002 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCNFP41002 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
CCNFP41002 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CCNFP41002 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC19.65■□□□□ 0.74
CCNFP41002 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC19.65■□□□□ 0.74
CCNFP41002 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCNFP41002 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CCNFP41002 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC19.65■□□□□ 0.74
CCNFP41002 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CCNFP41002 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CCNFP41002 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCNFP41002 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCNFP41002 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC19.65■□□□□ 0.74
CCNFP41002 AC069152.1-201ENST00000438030 544 ntBASIC19.65■□□□□ 0.74
CCNFP41002 AC097658.1-201ENST00000475555 843 ntBASIC19.65■□□□□ 0.74
CCNFP41002 RGMA-211ENST00000557420 989 ntTSL 3 BASIC19.65■□□□□ 0.74
CCNFP41002 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC19.65■□□□□ 0.74
CCNFP41002 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CCNFP41002 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCNFP41002 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCNFP41002 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CCNFP41002 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CCNFP41002 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CCNFP41002 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CCNFP41002 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCNFP41002 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
CCNFP41002 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.74
CCNFP41002 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.74
CCNFP41002 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
CCNFP41002 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCNFP41002 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
CCNFP41002 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
CCNFP41002 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC19.64■□□□□ 0.73
CCNFP41002 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC19.64■□□□□ 0.73
CCNFP41002 NME6-213ENST00000451657 871 ntTSL 2 BASIC19.64■□□□□ 0.73
CCNFP41002 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC19.64■□□□□ 0.73
CCNFP41002 OR2A1-AS1-201ENST00000462305 773 ntBASIC19.64■□□□□ 0.73
CCNFP41002 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC19.64■□□□□ 0.73
CCNFP41002 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CCNFP41002 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC19.64■□□□□ 0.73
CCNFP41002 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC19.64■□□□□ 0.73
CCNFP41002 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC19.64■□□□□ 0.73
CCNFP41002 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCNFP41002 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC19.64■□□□□ 0.73
CCNFP41002 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CCNFP41002 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCNFP41002 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCNFP41002 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC19.64■□□□□ 0.73
CCNFP41002 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCNFP41002 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCNFP41002 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCNFP41002 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CCNFP41002 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CCNFP41002 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCNFP41002 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCNFP41002 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCNFP41002 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC19.63■□□□□ 0.73
CCNFP41002 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCNFP41002 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC19.63■□□□□ 0.73
CCNFP41002 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
CCNFP41002 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCNFP41002 AL355802.2-201ENST00000402069 882 ntBASIC19.63■□□□□ 0.73
CCNFP41002 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC19.63■□□□□ 0.73
CCNFP41002 RHEB-204ENST00000472642 900 ntTSL 3 BASIC19.63■□□□□ 0.73
CCNFP41002 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CCNFP41002 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCNFP41002 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCNFP41002 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC19.63■□□□□ 0.73
CCNFP41002 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
CCNFP41002 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
CCNFP41002 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC19.62■□□□□ 0.73
CCNFP41002 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC19.62■□□□□ 0.73
CCNFP41002 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCNFP41002 PHGDH-210ENST00000641115 1638 ntBASIC19.62■□□□□ 0.73
CCNFP41002 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
CCNFP41002 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC19.62■□□□□ 0.73
CCNFP41002 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
CCNFP41002 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
CCNFP41002 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC19.62■□□□□ 0.73
CCNFP41002 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC19.62■□□□□ 0.73
CCNFP41002 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCNFP41002 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC19.62■□□□□ 0.73
CCNFP41002 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC19.62■□□□□ 0.73
CCNFP41002 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CCNFP41002 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC19.62■□□□□ 0.73
CCNFP41002 MYC-209ENST00000641252 345 ntBASIC19.62■□□□□ 0.73
CCNFP41002 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
CCNFP41002 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCNFP41002 TRIM7-205ENST00000422067 1954 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CCNFP41002 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
CCNFP41002 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
CCNFP41002 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CCNFP41002 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 56.8 ms