Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC21.27■■□□□ 1
RFX1P22670 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
RFX1P22670 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
RFX1P22670 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC21.27■■□□□ 1
RFX1P22670 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
RFX1P22670 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC21.27■■□□□ 1
RFX1P22670 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC21.27■■□□□ 1
RFX1P22670 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC21.27■■□□□ 1
RFX1P22670 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC21.27■■□□□ 1
RFX1P22670 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC21.27■■□□□ 1
RFX1P22670 AP001412.1-201ENST00000608405 714 ntBASIC21.27■■□□□ 1
RFX1P22670 AC133561.5-201ENST00000635547 218 ntBASIC21.27■■□□□ 1
RFX1P22670 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
RFX1P22670 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC21.27■■□□□ 1
RFX1P22670 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC21.27■■□□□ 1
RFX1P22670 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC21.27■■□□□ 1
RFX1P22670 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
RFX1P22670 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
RFX1P22670 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
RFX1P22670 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC21.27■□□□□ 0.99
RFX1P22670 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC21.27■□□□□ 0.99
RFX1P22670 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RFX1P22670 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RFX1P22670 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RFX1P22670 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
RFX1P22670 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
RFX1P22670 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
RFX1P22670 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
RFX1P22670 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC21.26■□□□□ 0.99
RFX1P22670 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
RFX1P22670 GGT1-206ENST00000404223 952 ntTSL 2 BASIC21.26■□□□□ 0.99
RFX1P22670 AC012618.2-201ENST00000428058 849 ntBASIC21.26■□□□□ 0.99
RFX1P22670 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC21.26■□□□□ 0.99
RFX1P22670 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC21.26■□□□□ 0.99
RFX1P22670 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RFX1P22670 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RFX1P22670 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC21.26■□□□□ 0.99
RFX1P22670 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC21.26■□□□□ 0.99
RFX1P22670 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RFX1P22670 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC21.26■□□□□ 0.99
RFX1P22670 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RFX1P22670 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
RFX1P22670 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RFX1P22670 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC21.26■□□□□ 0.99
RFX1P22670 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RFX1P22670 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC21.25■□□□□ 0.99
RFX1P22670 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
RFX1P22670 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
RFX1P22670 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC21.25■□□□□ 0.99
RFX1P22670 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
RFX1P22670 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
RFX1P22670 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
RFX1P22670 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
RFX1P22670 CALM3-202ENST00000391918 702 ntTSL 2 BASIC21.25■□□□□ 0.99
RFX1P22670 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
RFX1P22670 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
RFX1P22670 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC21.25■□□□□ 0.99
RFX1P22670 TSPY7P-201ENST00000431358 1114 ntBASIC21.25■□□□□ 0.99
RFX1P22670 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
RFX1P22670 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC21.25■□□□□ 0.99
RFX1P22670 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC21.25■□□□□ 0.99
RFX1P22670 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC21.25■□□□□ 0.99
RFX1P22670 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
RFX1P22670 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC21.25■□□□□ 0.99
RFX1P22670 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC21.25■□□□□ 0.99
RFX1P22670 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
RFX1P22670 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
RFX1P22670 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
RFX1P22670 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
RFX1P22670 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC21.25■□□□□ 0.99
RFX1P22670 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
RFX1P22670 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC21.24■□□□□ 0.99
RFX1P22670 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
RFX1P22670 AC007952.6-201ENST00000573168 2673 ntBASIC21.24■□□□□ 0.99
RFX1P22670 AC003957.1-201ENST00000625108 2673 ntBASIC21.24■□□□□ 0.99
RFX1P22670 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC21.24■□□□□ 0.99
RFX1P22670 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
RFX1P22670 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
RFX1P22670 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
RFX1P22670 RER1-204ENST00000378518 522 ntTSL 3 BASIC21.24■□□□□ 0.99
RFX1P22670 POM121L13P-201ENST00000422362 380 ntBASIC21.24■□□□□ 0.99
RFX1P22670 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
RFX1P22670 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC21.24■□□□□ 0.99
RFX1P22670 AC018553.1-201ENST00000616682 1458 ntBASIC21.24■□□□□ 0.99
RFX1P22670 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
RFX1P22670 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
RFX1P22670 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC21.24■□□□□ 0.99
RFX1P22670 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC21.24■□□□□ 0.99
RFX1P22670 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
RFX1P22670 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC21.23■□□□□ 0.99
RFX1P22670 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
RFX1P22670 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC21.23■□□□□ 0.99
RFX1P22670 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
RFX1P22670 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
RFX1P22670 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
RFX1P22670 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC21.23■□□□□ 0.99
RFX1P22670 ISG20-202ENST00000379224 540 ntTSL 3 BASIC21.23■□□□□ 0.99
RFX1P22670 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC21.23■□□□□ 0.99
RFX1P22670 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
RFX1P22670 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms