Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
VPS4BO75351 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
VPS4BO75351 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
VPS4BO75351 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
VPS4BO75351 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC19.14■□□□□ 0.65
VPS4BO75351 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
VPS4BO75351 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
VPS4BO75351 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC19.14■□□□□ 0.65
VPS4BO75351 TREX2-206ENST00000370232 1864 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
VPS4BO75351 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
VPS4BO75351 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VPS4BO75351 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VPS4BO75351 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
VPS4BO75351 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
VPS4BO75351 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC19.13■□□□□ 0.65
VPS4BO75351 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC19.13■□□□□ 0.65
VPS4BO75351 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
VPS4BO75351 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
VPS4BO75351 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC19.13■□□□□ 0.65
VPS4BO75351 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VPS4BO75351 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
VPS4BO75351 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
VPS4BO75351 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC19.13■□□□□ 0.65
VPS4BO75351 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
VPS4BO75351 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
VPS4BO75351 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VPS4BO75351 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VPS4BO75351 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VPS4BO75351 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
VPS4BO75351 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
VPS4BO75351 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC19.12■□□□□ 0.65
VPS4BO75351 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VPS4BO75351 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC19.12■□□□□ 0.65
VPS4BO75351 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VPS4BO75351 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VPS4BO75351 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC19.12■□□□□ 0.65
VPS4BO75351 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
VPS4BO75351 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
VPS4BO75351 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VPS4BO75351 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
VPS4BO75351 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC19.12■□□□□ 0.65
VPS4BO75351 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VPS4BO75351 MIR1224-201ENST00000408193 85 ntBASIC19.12■□□□□ 0.65
VPS4BO75351 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
VPS4BO75351 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VPS4BO75351 UNC93B5-201ENST00000530315 699 ntBASIC19.12■□□□□ 0.65
VPS4BO75351 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC19.12■□□□□ 0.65
VPS4BO75351 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC19.12■□□□□ 0.65
VPS4BO75351 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC19.12■□□□□ 0.65
VPS4BO75351 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
VPS4BO75351 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VPS4BO75351 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VPS4BO75351 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC19.12■□□□□ 0.65
VPS4BO75351 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
VPS4BO75351 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VPS4BO75351 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VPS4BO75351 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VPS4BO75351 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VPS4BO75351 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VPS4BO75351 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
VPS4BO75351 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC19.11■□□□□ 0.65
VPS4BO75351 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
VPS4BO75351 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC19.11■□□□□ 0.65
VPS4BO75351 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC19.11■□□□□ 0.65
VPS4BO75351 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC19.11■□□□□ 0.65
VPS4BO75351 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC19.11■□□□□ 0.65
VPS4BO75351 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC19.11■□□□□ 0.65
VPS4BO75351 AC105020.6-201ENST00000621523 1217 ntBASIC19.11■□□□□ 0.65
VPS4BO75351 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VPS4BO75351 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VPS4BO75351 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
VPS4BO75351 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC19.11■□□□□ 0.65
VPS4BO75351 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VPS4BO75351 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VPS4BO75351 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VPS4BO75351 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
VPS4BO75351 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VPS4BO75351 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VPS4BO75351 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC19.1■□□□□ 0.65
VPS4BO75351 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC19.1■□□□□ 0.65
VPS4BO75351 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
VPS4BO75351 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC19.1■□□□□ 0.65
VPS4BO75351 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
VPS4BO75351 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VPS4BO75351 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VPS4BO75351 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
VPS4BO75351 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VPS4BO75351 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC19.1■□□□□ 0.65
VPS4BO75351 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
VPS4BO75351 RHOD-202ENST00000532559 538 ntTSL 3 BASIC19.1■□□□□ 0.65
VPS4BO75351 CBFB-203ENST00000561924 584 ntTSL 5 BASIC19.1■□□□□ 0.65
VPS4BO75351 FAM197Y4-202ENST00000622692 608 ntBASIC19.1■□□□□ 0.65
VPS4BO75351 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
VPS4BO75351 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VPS4BO75351 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
VPS4BO75351 TP73-202ENST00000354437 2140 ntTSL 5 BASIC19.1■□□□□ 0.65
VPS4BO75351 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
VPS4BO75351 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
VPS4BO75351 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
VPS4BO75351 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 48.9 ms