Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
LMX1BO60663 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
LMX1BO60663 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
LMX1BO60663 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
LMX1BO60663 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LMX1BO60663 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LMX1BO60663 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LMX1BO60663 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
LMX1BO60663 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LMX1BO60663 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LMX1BO60663 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
LMX1BO60663 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC17.16■□□□□ 0.34
LMX1BO60663 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC17.16■□□□□ 0.34
LMX1BO60663 AC004408.2-201ENST00000623613 2777 ntBASIC17.16■□□□□ 0.34
LMX1BO60663 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC17.16■□□□□ 0.34
LMX1BO60663 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
LMX1BO60663 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LMX1BO60663 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC17.16■□□□□ 0.34
LMX1BO60663 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
LMX1BO60663 NME6-213ENST00000451657 871 ntTSL 2 BASIC17.16■□□□□ 0.34
LMX1BO60663 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC17.16■□□□□ 0.34
LMX1BO60663 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC17.16■□□□□ 0.34
LMX1BO60663 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC17.16■□□□□ 0.34
LMX1BO60663 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
LMX1BO60663 AC060766.5-201ENST00000590539 871 ntBASIC17.16■□□□□ 0.34
LMX1BO60663 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LMX1BO60663 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC17.16■□□□□ 0.34
LMX1BO60663 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC17.16■□□□□ 0.34
LMX1BO60663 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LMX1BO60663 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC17.16■□□□□ 0.34
LMX1BO60663 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC17.16■□□□□ 0.34
LMX1BO60663 Z82202.1-201ENST00000623446 1880 ntBASIC17.16■□□□□ 0.34
LMX1BO60663 KRT17P1-201ENST00000399211 1546 ntBASIC17.16■□□□□ 0.34
LMX1BO60663 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LMX1BO60663 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LMX1BO60663 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC17.16■□□□□ 0.34
LMX1BO60663 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LMX1BO60663 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
LMX1BO60663 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
LMX1BO60663 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LMX1BO60663 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC17.15■□□□□ 0.34
LMX1BO60663 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LMX1BO60663 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC17.15■□□□□ 0.34
LMX1BO60663 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
LMX1BO60663 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC17.15■□□□□ 0.34
LMX1BO60663 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC17.15■□□□□ 0.34
LMX1BO60663 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LMX1BO60663 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LMX1BO60663 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LMX1BO60663 MIR718-201ENST00000390190 70 ntBASIC17.15■□□□□ 0.34
LMX1BO60663 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
LMX1BO60663 RHOD-202ENST00000532559 538 ntTSL 3 BASIC17.15■□□□□ 0.34
LMX1BO60663 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC17.15■□□□□ 0.34
LMX1BO60663 AL359736.2-201ENST00000621992 437 ntBASIC17.15■□□□□ 0.34
LMX1BO60663 FAM197Y4-202ENST00000622692 608 ntBASIC17.15■□□□□ 0.34
LMX1BO60663 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LMX1BO60663 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC17.15■□□□□ 0.34
LMX1BO60663 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
LMX1BO60663 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC17.15■□□□□ 0.34
LMX1BO60663 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
LMX1BO60663 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LMX1BO60663 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
LMX1BO60663 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
LMX1BO60663 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
LMX1BO60663 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
LMX1BO60663 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
LMX1BO60663 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC17.15■□□□□ 0.34
LMX1BO60663 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
LMX1BO60663 TNXA-203ENST00000507684 2038 ntBASIC17.14■□□□□ 0.34
LMX1BO60663 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
LMX1BO60663 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LMX1BO60663 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LMX1BO60663 PTGES2-AS1-201ENST00000443493 2100 ntBASIC17.14■□□□□ 0.33
LMX1BO60663 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
LMX1BO60663 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
LMX1BO60663 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LMX1BO60663 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LMX1BO60663 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LMX1BO60663 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC17.14■□□□□ 0.33
LMX1BO60663 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
LMX1BO60663 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC17.14■□□□□ 0.33
LMX1BO60663 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC17.14■□□□□ 0.33
LMX1BO60663 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC17.14■□□□□ 0.33
LMX1BO60663 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LMX1BO60663 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC17.14■□□□□ 0.33
LMX1BO60663 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
LMX1BO60663 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LMX1BO60663 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
LMX1BO60663 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC17.14■□□□□ 0.33
LMX1BO60663 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
LMX1BO60663 ELMOD1-206ENST00000531234 1832 ntTSL 2 BASIC17.14■□□□□ 0.33
LMX1BO60663 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC17.14■□□□□ 0.33
LMX1BO60663 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LMX1BO60663 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LMX1BO60663 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC17.13■□□□□ 0.33
LMX1BO60663 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC17.13■□□□□ 0.33
LMX1BO60663 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC17.13■□□□□ 0.33
LMX1BO60663 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
LMX1BO60663 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
LMX1BO60663 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms