Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC15.24■□□□□ 0.03
COL6A5A8TX70 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC15.24■□□□□ 0.03
COL6A5A8TX70 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL6A5A8TX70 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
COL6A5A8TX70 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL6A5A8TX70 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC15.24■□□□□ 0.03
COL6A5A8TX70 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
COL6A5A8TX70 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC15.24■□□□□ 0.03
COL6A5A8TX70 PTPA-216ENST00000432651 857 ntTSL 2 BASIC15.24■□□□□ 0.03
COL6A5A8TX70 DRAXINP1-201ENST00000437611 948 ntBASIC15.24■□□□□ 0.03
COL6A5A8TX70 TPM1-218ENST00000559281 851 ntTSL 5 BASIC15.24■□□□□ 0.03
COL6A5A8TX70 AL353801.3-201ENST00000609898 542 ntBASIC15.24■□□□□ 0.03
COL6A5A8TX70 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC15.24■□□□□ 0.03
COL6A5A8TX70 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
COL6A5A8TX70 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL6A5A8TX70 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC15.24■□□□□ 0.03
COL6A5A8TX70 AL031284.1-201ENST00000419297 478 ntBASIC15.24■□□□□ 0.03
COL6A5A8TX70 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
COL6A5A8TX70 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC15.24■□□□□ 0.03
COL6A5A8TX70 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
COL6A5A8TX70 AC080038.3-201ENST00000623346 1952 ntBASIC15.23■□□□□ 0.03
COL6A5A8TX70 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC15.23■□□□□ 0.03
COL6A5A8TX70 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL6A5A8TX70 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL6A5A8TX70 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC15.23■□□□□ 0.03
COL6A5A8TX70 AP002414.4-201ENST00000589764 1148 ntBASIC15.23■□□□□ 0.03
COL6A5A8TX70 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
COL6A5A8TX70 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
COL6A5A8TX70 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
COL6A5A8TX70 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC15.23■□□□□ 0.03
COL6A5A8TX70 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL6A5A8TX70 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL6A5A8TX70 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
COL6A5A8TX70 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
COL6A5A8TX70 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL6A5A8TX70 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL6A5A8TX70 AC034232.1-201ENST00000506026 1064 ntBASIC15.23■□□□□ 0.03
COL6A5A8TX70 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC15.23■□□□□ 0.03
COL6A5A8TX70 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL6A5A8TX70 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC15.23■□□□□ 0.03
COL6A5A8TX70 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
COL6A5A8TX70 AC018553.1-201ENST00000616682 1458 ntBASIC15.22■□□□□ 0.03
COL6A5A8TX70 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC15.22■□□□□ 0.03
COL6A5A8TX70 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL6A5A8TX70 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL6A5A8TX70 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
COL6A5A8TX70 TSPY22P-201ENST00000427496 604 ntBASIC15.22■□□□□ 0.03
COL6A5A8TX70 RNPS1P1-201ENST00000507437 918 ntBASIC15.22■□□□□ 0.03
COL6A5A8TX70 AP003555.3-201ENST00000534086 432 ntTSL 4 BASIC15.22■□□□□ 0.03
COL6A5A8TX70 H3F3B-206ENST00000587560 551 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
COL6A5A8TX70 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC15.22■□□□□ 0.03
COL6A5A8TX70 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC15.22■□□□□ 0.03
COL6A5A8TX70 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL6A5A8TX70 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC15.22■□□□□ 0.03
COL6A5A8TX70 TFP1-202ENST00000475455 1573 ntBASIC15.22■□□□□ 0.03
COL6A5A8TX70 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC15.22■□□□□ 0.03
COL6A5A8TX70 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL6A5A8TX70 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
COL6A5A8TX70 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
COL6A5A8TX70 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL6A5A8TX70 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
COL6A5A8TX70 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC15.22■□□□□ 0.03
COL6A5A8TX70 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC15.22■□□□□ 0.03
COL6A5A8TX70 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
COL6A5A8TX70 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL6A5A8TX70 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL6A5A8TX70 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
COL6A5A8TX70 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC15.21■□□□□ 0.03
COL6A5A8TX70 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC15.21■□□□□ 0.03
COL6A5A8TX70 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC15.21■□□□□ 0.03
COL6A5A8TX70 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC15.21■□□□□ 0.03
COL6A5A8TX70 MIR3197-201ENST00000582241 73 ntBASIC15.21■□□□□ 0.03
COL6A5A8TX70 RPS15-207ENST00000591032 550 ntTSL 3 BASIC15.21■□□□□ 0.03
COL6A5A8TX70 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
COL6A5A8TX70 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
COL6A5A8TX70 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
COL6A5A8TX70 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC15.21■□□□□ 0.03
COL6A5A8TX70 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC15.21■□□□□ 0.03
COL6A5A8TX70 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
COL6A5A8TX70 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
COL6A5A8TX70 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC15.21■□□□□ 0.03
COL6A5A8TX70 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC15.21■□□□□ 0.03
COL6A5A8TX70 HLA-F-220ENST00000434407 884 ntBASIC15.21■□□□□ 0.03
COL6A5A8TX70 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
COL6A5A8TX70 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
COL6A5A8TX70 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.02
COL6A5A8TX70 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.02
COL6A5A8TX70 LINC00167-201ENST00000530583 1419 ntBASIC15.21■□□□□ 0.02
COL6A5A8TX70 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.02
COL6A5A8TX70 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
COL6A5A8TX70 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
COL6A5A8TX70 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC15.2■□□□□ 0.02
COL6A5A8TX70 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
COL6A5A8TX70 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC15.2■□□□□ 0.02
COL6A5A8TX70 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC15.2■□□□□ 0.02
COL6A5A8TX70 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC15.2■□□□□ 0.02
COL6A5A8TX70 AC027601.4-201ENST00000611259 610 ntBASIC15.2■□□□□ 0.02
COL6A5A8TX70 HLA-A-209ENST00000638375 975 ntBASIC15.2■□□□□ 0.02
COL6A5A8TX70 CBWD2-204ENST00000433343 1411 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
COL6A5A8TX70 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC15.2■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms