Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC17.65■□□□□ 0.42
COL6A6A6NMZ7 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC17.65■□□□□ 0.42
COL6A6A6NMZ7 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC17.65■□□□□ 0.42
COL6A6A6NMZ7 TUBB8P6-201ENST00000436895 1288 ntBASIC17.65■□□□□ 0.42
COL6A6A6NMZ7 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
COL6A6A6NMZ7 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC17.65■□□□□ 0.42
COL6A6A6NMZ7 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC17.65■□□□□ 0.42
COL6A6A6NMZ7 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC17.65■□□□□ 0.42
COL6A6A6NMZ7 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC17.65■□□□□ 0.42
COL6A6A6NMZ7 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC17.65■□□□□ 0.42
COL6A6A6NMZ7 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
COL6A6A6NMZ7 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC17.65■□□□□ 0.42
COL6A6A6NMZ7 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
COL6A6A6NMZ7 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL6A6A6NMZ7 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC17.65■□□□□ 0.42
COL6A6A6NMZ7 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
COL6A6A6NMZ7 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL6A6A6NMZ7 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL6A6A6NMZ7 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
COL6A6A6NMZ7 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
COL6A6A6NMZ7 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC17.64■□□□□ 0.41
COL6A6A6NMZ7 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
COL6A6A6NMZ7 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL6A6A6NMZ7 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
COL6A6A6NMZ7 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC17.64■□□□□ 0.41
COL6A6A6NMZ7 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC17.64■□□□□ 0.41
COL6A6A6NMZ7 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
COL6A6A6NMZ7 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC17.64■□□□□ 0.41
COL6A6A6NMZ7 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL6A6A6NMZ7 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL6A6A6NMZ7 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL6A6A6NMZ7 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
COL6A6A6NMZ7 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL6A6A6NMZ7 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL6A6A6NMZ7 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC17.64■□□□□ 0.41
COL6A6A6NMZ7 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL6A6A6NMZ7 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL6A6A6NMZ7 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
COL6A6A6NMZ7 PPIH-202ENST00000372549 327 ntTSL 3 BASIC17.64■□□□□ 0.41
COL6A6A6NMZ7 FAM220CP-201ENST00000395253 831 ntBASIC17.64■□□□□ 0.41
COL6A6A6NMZ7 TSPY19P-201ENST00000418461 509 ntBASIC17.64■□□□□ 0.41
COL6A6A6NMZ7 RPP21-221ENST00000428040 594 ntTSL 2 BASIC17.64■□□□□ 0.41
COL6A6A6NMZ7 TSPY18P-201ENST00000441642 509 ntBASIC17.64■□□□□ 0.41
COL6A6A6NMZ7 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL6A6A6NMZ7 NUS1P1-201ENST00000446295 882 ntBASIC17.64■□□□□ 0.41
COL6A6A6NMZ7 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
COL6A6A6NMZ7 HLA-A-209ENST00000638375 975 ntBASIC17.64■□□□□ 0.41
COL6A6A6NMZ7 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
COL6A6A6NMZ7 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC17.64■□□□□ 0.41
COL6A6A6NMZ7 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC17.63■□□□□ 0.41
COL6A6A6NMZ7 AC018553.1-201ENST00000616682 1458 ntBASIC17.63■□□□□ 0.41
COL6A6A6NMZ7 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
COL6A6A6NMZ7 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
COL6A6A6NMZ7 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC17.63■□□□□ 0.41
COL6A6A6NMZ7 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL6A6A6NMZ7 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC17.63■□□□□ 0.41
COL6A6A6NMZ7 LINC01311-201ENST00000565162 1445 ntBASIC17.63■□□□□ 0.41
COL6A6A6NMZ7 AL121603.2-201ENST00000557373 2117 ntBASIC17.63■□□□□ 0.41
COL6A6A6NMZ7 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL6A6A6NMZ7 HLA-A-201ENST00000376802 1334 ntBASIC17.63■□□□□ 0.41
COL6A6A6NMZ7 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL6A6A6NMZ7 AC016734.2-201ENST00000624325 1377 ntBASIC17.63■□□□□ 0.41
COL6A6A6NMZ7 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
COL6A6A6NMZ7 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
COL6A6A6NMZ7 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
COL6A6A6NMZ7 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL6A6A6NMZ7 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC17.63■□□□□ 0.41
COL6A6A6NMZ7 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
COL6A6A6NMZ7 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
COL6A6A6NMZ7 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL6A6A6NMZ7 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC17.63■□□□□ 0.41
COL6A6A6NMZ7 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC17.63■□□□□ 0.41
COL6A6A6NMZ7 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
COL6A6A6NMZ7 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC17.63■□□□□ 0.41
COL6A6A6NMZ7 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
COL6A6A6NMZ7 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC17.62■□□□□ 0.41
COL6A6A6NMZ7 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL6A6A6NMZ7 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL6A6A6NMZ7 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC17.62■□□□□ 0.41
COL6A6A6NMZ7 BX119927.1-201ENST00000636596 1552 ntBASIC17.62■□□□□ 0.41
COL6A6A6NMZ7 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
COL6A6A6NMZ7 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL6A6A6NMZ7 Telomerase-vert.1-201ENST00000363312 438 ntBASIC17.62■□□□□ 0.41
COL6A6A6NMZ7 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC17.62■□□□□ 0.41
COL6A6A6NMZ7 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL6A6A6NMZ7 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL6A6A6NMZ7 KRT18P1-202ENST00000452408 1331 ntBASIC17.62■□□□□ 0.41
COL6A6A6NMZ7 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC17.62■□□□□ 0.41
COL6A6A6NMZ7 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL6A6A6NMZ7 TFP1-202ENST00000475455 1573 ntBASIC17.62■□□□□ 0.41
COL6A6A6NMZ7 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
COL6A6A6NMZ7 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
COL6A6A6NMZ7 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL6A6A6NMZ7 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL6A6A6NMZ7 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC17.61■□□□□ 0.41
COL6A6A6NMZ7 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC17.61■□□□□ 0.41
COL6A6A6NMZ7 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC17.61■□□□□ 0.41
COL6A6A6NMZ7 AC022898.2-201ENST00000616822 1312 ntBASIC17.61■□□□□ 0.41
COL6A6A6NMZ7 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
COL6A6A6NMZ7 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms