Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 AC068446.3-201ENST00000555285 382 ntBASIC7.1□□□□□ -1.27
CHMP4AQ9BY43 AC009113.2-201ENST00000563182 403 ntTSL 3 BASIC7.1□□□□□ -1.27
CHMP4AQ9BY43 AJ003147.1-201ENST00000576762 454 ntTSL 3 BASIC7.1□□□□□ -1.27
CHMP4AQ9BY43 AP005242.1-201ENST00000583946 467 ntTSL 3 BASIC7.1□□□□□ -1.27
CHMP4AQ9BY43 AC090953.1-201ENST00000604305 1092 ntBASIC7.1□□□□□ -1.27
CHMP4AQ9BY43 PDE4D-229ENST00000638939 375 ntTSL 5 BASIC7.1□□□□□ -1.27
CHMP4AQ9BY43 CASC19-264ENST00000641912 1184 ntBASIC7.1□□□□□ -1.27
CHMP4AQ9BY43 LINC01844-201ENST00000432677 2237 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
CHMP4AQ9BY43 TCF7L2-206ENST00000355995 4073 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
CHMP4AQ9BY43 ESCO1-204ENST00000622333 1850 ntTSL 2 BASIC7.1□□□□□ -1.27
CHMP4AQ9BY43 RIMS2-209ENST00000507740 8002 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
CHMP4AQ9BY43 TEK-205ENST00000615002 4666 ntTSL 5 BASIC7.1□□□□□ -1.27
CHMP4AQ9BY43 MAP9-208ENST00000515654 2044 ntTSL 5 BASIC7.1□□□□□ -1.27
CHMP4AQ9BY43 AL158064.2-203ENST00000639897 2003 ntTSL 5 BASIC7.1□□□□□ -1.27
CHMP4AQ9BY43 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC7.1□□□□□ -1.27
CHMP4AQ9BY43 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC7.1□□□□□ -1.27
CHMP4AQ9BY43 JCHAIN-201ENST00000254801 1438 ntAPPRIS P1 TSL 1 (best) BASIC7.1□□□□□ -1.27
CHMP4AQ9BY43 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC7.09□□□□□ -1.27
CHMP4AQ9BY43 FRAS1-207ENST00000512123 15624 ntAPPRIS P1 TSL 5 BASIC7.09□□□□□ -1.27
CHMP4AQ9BY43 AL513550.1-201ENST00000418945 1638 ntTSL 2 BASIC7.09□□□□□ -1.27
CHMP4AQ9BY43 DSPP-201ENST00000282478 4281 ntAPPRIS P1 TSL 5 BASIC7.09□□□□□ -1.27
CHMP4AQ9BY43 SUPT3H-202ENST00000371459 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC7.09□□□□□ -1.27
CHMP4AQ9BY43 OR1E2-201ENST00000248384 972 ntAPPRIS P1 BASIC7.09□□□□□ -1.27
CHMP4AQ9BY43 FCER1G-201ENST00000289902 591 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
CHMP4AQ9BY43 OR9A2-201ENST00000350513 1038 ntAPPRIS P1 BASIC7.09□□□□□ -1.27
CHMP4AQ9BY43 AC019155.1-201ENST00000382242 574 ntBASIC7.09□□□□□ -1.27
CHMP4AQ9BY43 RNU6-185P-201ENST00000384421 107 ntBASIC7.09□□□□□ -1.27
CHMP4AQ9BY43 RPS27AP11-201ENST00000402798 447 ntBASIC7.09□□□□□ -1.27
CHMP4AQ9BY43 AL391361.1-201ENST00000405580 489 ntBASIC7.09□□□□□ -1.27
CHMP4AQ9BY43 NPM1P4-201ENST00000414095 812 ntBASIC7.09□□□□□ -1.27
CHMP4AQ9BY43 AC009965.2-201ENST00000425328 970 ntBASIC7.09□□□□□ -1.27
CHMP4AQ9BY43 AC073069.1-201ENST00000428657 441 ntBASIC7.09□□□□□ -1.27
CHMP4AQ9BY43 RPS26P4-201ENST00000431743 355 ntBASIC7.09□□□□□ -1.27
CHMP4AQ9BY43 AL122019.1-201ENST00000438575 798 ntTSL 3 BASIC7.09□□□□□ -1.27
CHMP4AQ9BY43 LINC01891-201ENST00000439798 538 ntTSL 4 BASIC7.09□□□□□ -1.27
CHMP4AQ9BY43 LINC01789-201ENST00000443123 860 ntTSL 5 BASIC7.09□□□□□ -1.27
CHMP4AQ9BY43 LINC02210-201ENST00000444561 288 ntBASIC7.09□□□□□ -1.27
CHMP4AQ9BY43 AL022329.1-203ENST00000453811 451 ntTSL 3 BASIC7.09□□□□□ -1.27
CHMP4AQ9BY43 LINC01448-201ENST00000455947 1171 ntTSL 1 (best) BASIC7.09□□□□□ -1.27
CHMP4AQ9BY43 AC090602.1-201ENST00000469695 252 ntBASIC7.09□□□□□ -1.27
CHMP4AQ9BY43 NPM1P29-201ENST00000483112 803 ntBASIC7.09□□□□□ -1.27
CHMP4AQ9BY43 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC7.09□□□□□ -1.27
CHMP4AQ9BY43 AC063979.2-201ENST00000513767 958 ntTSL 5 BASIC7.09□□□□□ -1.27
CHMP4AQ9BY43 SCARNA16.4-201ENST00000516956 187 ntBASIC7.09□□□□□ -1.27
CHMP4AQ9BY43 AC079209.1-202ENST00000521953 522 ntTSL 3 BASIC7.09□□□□□ -1.27
CHMP4AQ9BY43 AP001266.2-201ENST00000534505 464 ntTSL 4 BASIC7.09□□□□□ -1.27
CHMP4AQ9BY43 AC008149.1-201ENST00000551844 525 ntTSL 4 BASIC7.09□□□□□ -1.27
CHMP4AQ9BY43 ST20-203ENST00000562759 694 ntAPPRIS P1 TSL 2 BASIC7.09□□□□□ -1.27
CHMP4AQ9BY43 AC092683.1-203ENST00000594050 654 ntTSL 5 BASIC7.09□□□□□ -1.27
CHMP4AQ9BY43 SUGT1P3-202ENST00000604259 383 ntBASIC7.09□□□□□ -1.27
CHMP4AQ9BY43 DARS-AS1-220ENST00000607985 660 ntTSL 5 BASIC7.09□□□□□ -1.27
CHMP4AQ9BY43 ATP13A5-205ENST00000620313 709 ntTSL 5 BASIC7.09□□□□□ -1.27
CHMP4AQ9BY43 AL139254.3-201ENST00000641097 674 ntBASIC7.09□□□□□ -1.27
CHMP4AQ9BY43 AC093311.1-201ENST00000506586 2021 ntBASIC7.09□□□□□ -1.27
CHMP4AQ9BY43 LRRC49-201ENST00000260382 2784 ntAPPRIS P3 TSL 1 (best) BASIC7.09□□□□□ -1.27
CHMP4AQ9BY43 GTPBP10-201ENST00000222511 7531 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.27
CHMP4AQ9BY43 AL592437.2-201ENST00000421655 2434 ntBASIC7.09□□□□□ -1.27
CHMP4AQ9BY43 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC7.09□□□□□ -1.27
CHMP4AQ9BY43 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC7.09□□□□□ -1.28
CHMP4AQ9BY43 AC079298.1-201ENST00000625026 1619 ntBASIC7.09□□□□□ -1.28
CHMP4AQ9BY43 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
CHMP4AQ9BY43 GBE1-205ENST00000489715 2513 ntAPPRIS ALT2 TSL 2 BASIC7.08□□□□□ -1.28
CHMP4AQ9BY43 PLCH1-AS1-201ENST00000475196 1308 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
CHMP4AQ9BY43 EIF1B-201ENST00000232905 1010 ntAPPRIS P1 TSL 1 (best) BASIC7.08□□□□□ -1.28
CHMP4AQ9BY43 RN7SKP162-201ENST00000363605 345 ntBASIC7.08□□□□□ -1.28
CHMP4AQ9BY43 IGLV4-3-201ENST00000390318 403 ntAPPRIS P1 BASIC7.08□□□□□ -1.28
CHMP4AQ9BY43 TRAV9-1-201ENST00000390431 338 ntAPPRIS P1 BASIC7.08□□□□□ -1.28
CHMP4AQ9BY43 NT5C3A-206ENST00000409787 840 ntTSL 2 BASIC7.08□□□□□ -1.28
CHMP4AQ9BY43 MARK2P12-201ENST00000420129 585 ntBASIC7.08□□□□□ -1.28
CHMP4AQ9BY43 RPL7P56-201ENST00000429441 717 ntBASIC7.08□□□□□ -1.28
CHMP4AQ9BY43 AC010890.1-202ENST00000432414 535 ntTSL 3 BASIC7.08□□□□□ -1.28
CHMP4AQ9BY43 AC008269.1-201ENST00000438070 646 ntTSL 3 BASIC7.08□□□□□ -1.28
CHMP4AQ9BY43 NDUFA5P8-201ENST00000449019 346 ntBASIC7.08□□□□□ -1.28
CHMP4AQ9BY43 AL122008.1-201ENST00000456078 452 ntTSL 3 BASIC7.08□□□□□ -1.28
CHMP4AQ9BY43 AC009495.2-201ENST00000457108 506 ntTSL 2 BASIC7.08□□□□□ -1.28
CHMP4AQ9BY43 RPL35AP19-201ENST00000469425 329 ntBASIC7.08□□□□□ -1.28
CHMP4AQ9BY43 RN7SL547P-201ENST00000490793 290 ntBASIC7.08□□□□□ -1.28
CHMP4AQ9BY43 FO393419.2-201ENST00000492975 428 ntTSL 3 BASIC7.08□□□□□ -1.28
CHMP4AQ9BY43 PTPN20-212ENST00000502254 599 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
CHMP4AQ9BY43 AC027627.1-201ENST00000506895 753 ntTSL 3 BASIC7.08□□□□□ -1.28
CHMP4AQ9BY43 AC040914.1-201ENST00000518674 318 ntTSL 3 BASIC7.08□□□□□ -1.28
CHMP4AQ9BY43 AC113386.1-201ENST00000523584 381 ntTSL 5 BASIC7.08□□□□□ -1.28
CHMP4AQ9BY43 AC130404.1-201ENST00000539362 739 ntTSL 2 BASIC7.08□□□□□ -1.28
CHMP4AQ9BY43 CACNA1C-IT1-201ENST00000542984 687 ntTSL 3 BASIC7.08□□□□□ -1.28
CHMP4AQ9BY43 AC091814.1-201ENST00000545258 719 ntTSL 3 BASIC7.08□□□□□ -1.28
CHMP4AQ9BY43 AC084757.1-201ENST00000559987 490 ntBASIC7.08□□□□□ -1.28
CHMP4AQ9BY43 AC104996.1-201ENST00000583250 591 ntTSL 5 BASIC7.08□□□□□ -1.28
CHMP4AQ9BY43 AC005856.1-201ENST00000585921 286 ntTSL 3 BASIC7.08□□□□□ -1.28
CHMP4AQ9BY43 XIST-210ENST00000602863 775 ntTSL 3 BASIC7.08□□□□□ -1.28
CHMP4AQ9BY43 SUMO2P15-201ENST00000604285 278 ntBASIC7.08□□□□□ -1.28
CHMP4AQ9BY43 AC112493.1-201ENST00000609836 303 ntTSL 3 BASIC7.08□□□□□ -1.28
CHMP4AQ9BY43 AC123768.3-201ENST00000613733 523 ntTSL 3 BASIC7.08□□□□□ -1.28
CHMP4AQ9BY43 C8orf59-210ENST00000614462 734 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
CHMP4AQ9BY43 AC007204.2-201ENST00000615022 616 ntBASIC7.08□□□□□ -1.28
CHMP4AQ9BY43 AC123768.4-201ENST00000616244 701 ntBASIC7.08□□□□□ -1.28
CHMP4AQ9BY43 PXT1-202ENST00000619547 619 ntAPPRIS ALT2 TSL 1 (best) BASIC7.08□□□□□ -1.28
CHMP4AQ9BY43 AC079298.3-201ENST00000624941 977 ntTSL 3 BASIC7.08□□□□□ -1.28
CHMP4AQ9BY43 CGA-206ENST00000630630 832 ntTSL 2 BASIC7.08□□□□□ -1.28
CHMP4AQ9BY43 DAOA-212ENST00000640578 378 ntAPPRIS ALT2 TSL 5 BASIC7.08□□□□□ -1.28
CHMP4AQ9BY43 UGT2A1-205ENST00000512704 2519 ntTSL 1 (best) BASIC7.08□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 97.5 ms