Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 RPL19P16-201ENST00000433839 588 ntBASIC4.68□□□□□ -1.66
VPS13AQ96RL7 FABP5P2-201ENST00000439042 408 ntBASIC4.68□□□□□ -1.66
VPS13AQ96RL7 HMGN1P9-201ENST00000515212 298 ntBASIC4.68□□□□□ -1.66
VPS13AQ96RL7 BUD31P1-201ENST00000521828 359 ntBASIC4.68□□□□□ -1.66
VPS13AQ96RL7 AL356608.1-201ENST00000610034 820 ntBASIC4.68□□□□□ -1.66
VPS13AQ96RL7 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC4.68□□□□□ -1.66
VPS13AQ96RL7 MAPK10-338ENST00000641647 3362 ntBASIC4.68□□□□□ -1.66
VPS13AQ96RL7 SLC13A1-201ENST00000194130 3815 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
VPS13AQ96RL7 OR2A7-202ENST00000641841 2062 ntAPPRIS P1 BASIC4.68□□□□□ -1.66
VPS13AQ96RL7 KIAA1328-202ENST00000586135 1863 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
VPS13AQ96RL7 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
VPS13AQ96RL7 EPS15-203ENST00000371733 5225 ntAPPRIS P2 TSL 1 (best) BASIC4.68□□□□□ -1.66
VPS13AQ96RL7 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC4.68□□□□□ -1.66
VPS13AQ96RL7 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC4.68□□□□□ -1.66
VPS13AQ96RL7 U3.35-201ENST00000408405 208 ntBASIC4.68□□□□□ -1.66
VPS13AQ96RL7 RPL23AP26-201ENST00000412728 464 ntBASIC4.68□□□□□ -1.66
VPS13AQ96RL7 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC4.68□□□□□ -1.66
VPS13AQ96RL7 AL356095.1-201ENST00000417217 199 ntBASIC4.68□□□□□ -1.66
VPS13AQ96RL7 UBE2E2-AS1-202ENST00000430018 499 ntTSL 2 BASIC4.68□□□□□ -1.66
VPS13AQ96RL7 AC105137.1-201ENST00000484355 562 ntBASIC4.68□□□□□ -1.66
VPS13AQ96RL7 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC4.68□□□□□ -1.66
VPS13AQ96RL7 AC010451.1-201ENST00000509057 556 ntTSL 3 BASIC4.68□□□□□ -1.66
VPS13AQ96RL7 AC108064.1-201ENST00000513791 460 ntBASIC4.68□□□□□ -1.66
VPS13AQ96RL7 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
VPS13AQ96RL7 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC4.68□□□□□ -1.66
VPS13AQ96RL7 TEX12-202ENST00000530752 787 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
VPS13AQ96RL7 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC4.68□□□□□ -1.66
VPS13AQ96RL7 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC4.68□□□□□ -1.66
VPS13AQ96RL7 LGI1-209ENST00000627699 664 ntTSL 3 BASIC4.68□□□□□ -1.66
VPS13AQ96RL7 CEP44-206ENST00000503780 4534 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
VPS13AQ96RL7 CLASP1-202ENST00000397587 7915 ntTSL 5 BASIC4.68□□□□□ -1.66
VPS13AQ96RL7 MUC3A-203ENST00000483366 9944 ntAPPRIS ALT2 TSL 5 BASIC4.68□□□□□ -1.66
VPS13AQ96RL7 ZNF736-202ENST00000423484 7119 ntAPPRIS P1 TSL 2 BASIC4.68□□□□□ -1.66
VPS13AQ96RL7 LIMCH1-202ENST00000381753 5705 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
VPS13AQ96RL7 TMPRSS11BNL-202ENST00000510782 3202 ntTSL 2 BASIC4.68□□□□□ -1.66
VPS13AQ96RL7 ZNF790-201ENST00000356725 3037 ntAPPRIS P1 TSL 2 BASIC4.68□□□□□ -1.66
VPS13AQ96RL7 SRSF11-201ENST00000370949 3034 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
VPS13AQ96RL7 RAB21-201ENST00000261263 15546 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
VPS13AQ96RL7 ATOX1-203ENST00000521264 4341 ntTSL 2 BASIC4.68□□□□□ -1.66
VPS13AQ96RL7 UNC79-206ENST00000621021 7377 ntAPPRIS P2 TSL 5 BASIC4.68□□□□□ -1.66
VPS13AQ96RL7 FILIP1L-201ENST00000331335 4219 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
VPS13AQ96RL7 LRBA-201ENST00000357115 9899 ntAPPRIS P3 TSL 1 (best) BASIC4.68□□□□□ -1.66
VPS13AQ96RL7 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC4.67□□□□□ -1.66
VPS13AQ96RL7 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
VPS13AQ96RL7 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC4.67□□□□□ -1.66
VPS13AQ96RL7 IARS-202ENST00000375643 4656 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
VPS13AQ96RL7 AL590762.2-201ENST00000395798 571 ntBASIC4.67□□□□□ -1.66
VPS13AQ96RL7 AL390316.1-201ENST00000406279 553 ntBASIC4.67□□□□□ -1.66
VPS13AQ96RL7 RN7SKP33-201ENST00000410942 340 ntBASIC4.67□□□□□ -1.66
VPS13AQ96RL7 AC108866.1-202ENST00000511064 573 ntTSL 4 BASIC4.67□□□□□ -1.66
VPS13AQ96RL7 AC006296.1-201ENST00000514401 591 ntTSL 2 BASIC4.67□□□□□ -1.66
VPS13AQ96RL7 AC010476.1-201ENST00000519111 851 ntBASIC4.67□□□□□ -1.66
VPS13AQ96RL7 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC4.67□□□□□ -1.66
VPS13AQ96RL7 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC4.67□□□□□ -1.66
VPS13AQ96RL7 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC4.67□□□□□ -1.66
VPS13AQ96RL7 FGF1-215ENST00000619447 3818 ntAPPRIS P1 TSL 4 BASIC4.67□□□□□ -1.66
VPS13AQ96RL7 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC4.67□□□□□ -1.66
VPS13AQ96RL7 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
VPS13AQ96RL7 ESRRG-203ENST00000361395 5216 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
VPS13AQ96RL7 ESRRG-209ENST00000408911 5216 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
VPS13AQ96RL7 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC4.67□□□□□ -1.66
VPS13AQ96RL7 MMS22L-201ENST00000275053 8643 ntAPPRIS P1 TSL 2 BASIC4.67□□□□□ -1.66
VPS13AQ96RL7 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC4.67□□□□□ -1.66
VPS13AQ96RL7 B3GALT5-203ENST00000380620 13170 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
VPS13AQ96RL7 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
VPS13AQ96RL7 ARHGAP32-201ENST00000310343 10111 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
VPS13AQ96RL7 FGF1-202ENST00000359370 3660 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
VPS13AQ96RL7 AC127164.1-201ENST00000548738 4196 ntTSL 2 BASIC4.67□□□□□ -1.66
VPS13AQ96RL7 TRAM2-201ENST00000182527 6908 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
VPS13AQ96RL7 PCGF5-205ENST00000614189 7037 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
VPS13AQ96RL7 VRK2-206ENST00000435505 2446 ntAPPRIS P3 TSL 1 (best) BASIC4.67□□□□□ -1.66
VPS13AQ96RL7 RN7SL189P-201ENST00000468631 289 ntBASIC4.67□□□□□ -1.66
VPS13AQ96RL7 NPM1P41-201ENST00000512920 831 ntBASIC4.67□□□□□ -1.66
VPS13AQ96RL7 RN7SKP98-201ENST00000517070 156 ntBASIC4.67□□□□□ -1.66
VPS13AQ96RL7 SEPT10P1-201ENST00000517342 1162 ntBASIC4.67□□□□□ -1.66
VPS13AQ96RL7 FOPNL-208ENST00000575744 565 ntTSL 4 BASIC4.67□□□□□ -1.66
VPS13AQ96RL7 SALL4P2-201ENST00000423288 2910 ntBASIC4.67□□□□□ -1.66
VPS13AQ96RL7 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
VPS13AQ96RL7 ABCB5-203ENST00000406935 1483 ntTSL 2 BASIC4.67□□□□□ -1.66
VPS13AQ96RL7 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC4.67□□□□□ -1.66
VPS13AQ96RL7 AC087257.1-201ENST00000506925 2639 ntTSL 4 BASIC4.67□□□□□ -1.66
VPS13AQ96RL7 PRDM2-201ENST00000235372 7957 ntAPPRIS P4 TSL 1 (best) BASIC4.67□□□□□ -1.66
VPS13AQ96RL7 MIR383-201ENST00000362257 73 ntBASIC4.67□□□□□ -1.66
VPS13AQ96RL7 AC092920.1-201ENST00000428516 678 ntTSL 5 BASIC4.67□□□□□ -1.66
VPS13AQ96RL7 AC131571.1-201ENST00000429821 577 ntTSL 5 BASIC4.67□□□□□ -1.66
VPS13AQ96RL7 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC4.67□□□□□ -1.66
VPS13AQ96RL7 HNRNPCP4-201ENST00000571636 900 ntBASIC4.67□□□□□ -1.66
VPS13AQ96RL7 ZNF415P1-201ENST00000582279 1166 ntBASIC4.67□□□□□ -1.66
VPS13AQ96RL7 CEACAM7-204ENST00000602225 524 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
VPS13AQ96RL7 AC010424.2-201ENST00000607594 443 ntBASIC4.67□□□□□ -1.66
VPS13AQ96RL7 VPS29-212ENST00000621131 1124 ntTSL 3 BASIC4.67□□□□□ -1.66
VPS13AQ96RL7 CLUL1-213ENST00000620089 1947 ntTSL 5 BASIC4.67□□□□□ -1.66
VPS13AQ96RL7 MEPE-202ENST00000395102 2123 ntAPPRIS ALT2 TSL 5 BASIC4.66□□□□□ -1.66
VPS13AQ96RL7 KCNN3-201ENST00000271915 13033 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
VPS13AQ96RL7 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC4.66□□□□□ -1.66
VPS13AQ96RL7 CTNND1-203ENST00000361391 6232 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
VPS13AQ96RL7 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC4.66□□□□□ -1.66
VPS13AQ96RL7 USP45-204ENST00000369233 2514 ntTSL 5 BASIC4.66□□□□□ -1.66
VPS13AQ96RL7 ST18-201ENST00000276480 6187 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
VPS13AQ96RL7 ERVFRD-3-201ENST00000578561 1617 ntBASIC4.66□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 85 ms