Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC4.93□□□□□ -1.62
CLHC1Q8NHS4 WDR35-202ENST00000345530 6960 ntAPPRIS ALT1 TSL 1 (best) BASIC4.93□□□□□ -1.62
CLHC1Q8NHS4 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC4.93□□□□□ -1.62
CLHC1Q8NHS4 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC4.93□□□□□ -1.62
CLHC1Q8NHS4 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
CLHC1Q8NHS4 CHRM2-203ENST00000445907 5918 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
CLHC1Q8NHS4 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
CLHC1Q8NHS4 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC4.92□□□□□ -1.62
CLHC1Q8NHS4 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC4.92□□□□□ -1.62
CLHC1Q8NHS4 LCMT1-AS2-202ENST00000565214 5666 ntBASIC4.92□□□□□ -1.62
CLHC1Q8NHS4 CCDC178-202ENST00000383096 3391 ntAPPRIS ALT2 TSL 5 BASIC4.92□□□□□ -1.62
CLHC1Q8NHS4 CKAP2-207ENST00000490903 3395 ntAPPRIS ALT2 TSL 2 BASIC4.92□□□□□ -1.62
CLHC1Q8NHS4 C3orf67-AS1-202ENST00000482372 2203 ntTSL 2 BASIC4.92□□□□□ -1.62
CLHC1Q8NHS4 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
CLHC1Q8NHS4 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC4.92□□□□□ -1.62
CLHC1Q8NHS4 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC4.92□□□□□ -1.62
CLHC1Q8NHS4 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
CLHC1Q8NHS4 POT1-AS1-205ENST00000453342 3252 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
CLHC1Q8NHS4 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC4.92□□□□□ -1.62
CLHC1Q8NHS4 U3.3-201ENST00000362986 216 ntBASIC4.92□□□□□ -1.62
CLHC1Q8NHS4 AC104297.1-201ENST00000393779 870 ntBASIC4.92□□□□□ -1.62
CLHC1Q8NHS4 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC4.92□□□□□ -1.62
CLHC1Q8NHS4 AL355339.1-202ENST00000417542 458 ntTSL 2 BASIC4.92□□□□□ -1.62
CLHC1Q8NHS4 AL590609.2-201ENST00000421430 368 ntBASIC4.92□□□□□ -1.62
CLHC1Q8NHS4 EI24P4-201ENST00000423683 1078 ntBASIC4.92□□□□□ -1.62
CLHC1Q8NHS4 LINC01731-201ENST00000428035 420 ntTSL 3 BASIC4.92□□□□□ -1.62
CLHC1Q8NHS4 AL355339.1-201ENST00000434386 435 ntTSL 2 BASIC4.92□□□□□ -1.62
CLHC1Q8NHS4 LINC02094-201ENST00000437646 520 ntTSL 2 BASIC4.92□□□□□ -1.62
CLHC1Q8NHS4 RPL12P11-201ENST00000439970 501 ntBASIC4.92□□□□□ -1.62
CLHC1Q8NHS4 CYCSP24-201ENST00000445119 316 ntBASIC4.92□□□□□ -1.62
CLHC1Q8NHS4 AC012512.1-201ENST00000446594 718 ntBASIC4.92□□□□□ -1.62
CLHC1Q8NHS4 AL592431.1-201ENST00000451090 317 ntTSL 3 BASIC4.92□□□□□ -1.62
CLHC1Q8NHS4 AC091180.1-201ENST00000462104 372 ntBASIC4.92□□□□□ -1.62
CLHC1Q8NHS4 NIP7P2-201ENST00000485801 544 ntBASIC4.92□□□□□ -1.62
CLHC1Q8NHS4 AC097173.1-201ENST00000505862 819 ntBASIC4.92□□□□□ -1.62
CLHC1Q8NHS4 RPS3A-210ENST00000512690 845 ntTSL 3 BASIC4.92□□□□□ -1.62
CLHC1Q8NHS4 RNA5SP228-201ENST00000516232 133 ntBASIC4.92□□□□□ -1.62
CLHC1Q8NHS4 AC012400.1-201ENST00000518452 381 ntBASIC4.92□□□□□ -1.62
CLHC1Q8NHS4 LINC01947-201ENST00000523742 566 ntTSL 4 BASIC4.92□□□□□ -1.62
CLHC1Q8NHS4 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC4.92□□□□□ -1.62
CLHC1Q8NHS4 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC4.92□□□□□ -1.62
CLHC1Q8NHS4 ASB8-215ENST00000540782 659 ntTSL 3 BASIC4.92□□□□□ -1.62
CLHC1Q8NHS4 AC137590.1-201ENST00000542422 495 ntTSL 3 BASIC4.92□□□□□ -1.62
CLHC1Q8NHS4 AC127381.1-201ENST00000555979 939 ntBASIC4.92□□□□□ -1.62
CLHC1Q8NHS4 AL390726.5-202ENST00000564800 256 ntBASIC4.92□□□□□ -1.62
CLHC1Q8NHS4 AC109460.2-201ENST00000569974 544 ntTSL 3 BASIC4.92□□□□□ -1.62
CLHC1Q8NHS4 BCAR4-204ENST00000573319 1273 ntTSL 5 BASIC4.92□□□□□ -1.62
CLHC1Q8NHS4 AC020978.7-201ENST00000575953 1187 ntBASIC4.92□□□□□ -1.62
CLHC1Q8NHS4 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC4.92□□□□□ -1.62
CLHC1Q8NHS4 AL135786.2-201ENST00000608422 615 ntBASIC4.92□□□□□ -1.62
CLHC1Q8NHS4 AC007204.2-201ENST00000615022 616 ntBASIC4.92□□□□□ -1.62
CLHC1Q8NHS4 PAK3-213ENST00000620137 2130 ntTSL 5 BASIC4.92□□□□□ -1.62
CLHC1Q8NHS4 AC074101.1-201ENST00000637861 241 ntBASIC4.92□□□□□ -1.62
CLHC1Q8NHS4 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC4.92□□□□□ -1.62
CLHC1Q8NHS4 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
CLHC1Q8NHS4 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC4.92□□□□□ -1.62
CLHC1Q8NHS4 AL731532.2-201ENST00000623542 1953 ntBASIC4.92□□□□□ -1.62
CLHC1Q8NHS4 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
CLHC1Q8NHS4 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
CLHC1Q8NHS4 AC235565.1-201ENST00000456962 1325 ntBASIC4.92□□□□□ -1.62
CLHC1Q8NHS4 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC4.92□□□□□ -1.62
CLHC1Q8NHS4 AP001267.1-201ENST00000531742 2074 ntTSL 2 BASIC4.92□□□□□ -1.62
CLHC1Q8NHS4 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
CLHC1Q8NHS4 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC4.91□□□□□ -1.62
CLHC1Q8NHS4 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
CLHC1Q8NHS4 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC4.91□□□□□ -1.62
CLHC1Q8NHS4 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC4.91□□□□□ -1.62
CLHC1Q8NHS4 FTX-210ENST00000603037 8347 ntTSL 5 BASIC4.91□□□□□ -1.62
CLHC1Q8NHS4 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
CLHC1Q8NHS4 DDX18P3-201ENST00000404856 2007 ntBASIC4.91□□□□□ -1.62
CLHC1Q8NHS4 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
CLHC1Q8NHS4 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC4.91□□□□□ -1.62
CLHC1Q8NHS4 GLYAT-201ENST00000278400 1150 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
CLHC1Q8NHS4 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC4.91□□□□□ -1.62
CLHC1Q8NHS4 PRKACB-203ENST00000370684 869 ntTSL 5 BASIC4.91□□□□□ -1.62
CLHC1Q8NHS4 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
CLHC1Q8NHS4 AL513325.1-201ENST00000417716 1034 ntBASIC4.91□□□□□ -1.62
CLHC1Q8NHS4 LINC01821-201ENST00000419786 1084 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
CLHC1Q8NHS4 RPL7AP61-201ENST00000443410 636 ntBASIC4.91□□□□□ -1.62
CLHC1Q8NHS4 AL359265.3-201ENST00000456125 579 ntTSL 5 BASIC4.91□□□□□ -1.62
CLHC1Q8NHS4 AL133445.1-201ENST00000467051 452 ntBASIC4.91□□□□□ -1.62
CLHC1Q8NHS4 CREM-238ENST00000488741 651 ntTSL 2 BASIC4.91□□□□□ -1.62
CLHC1Q8NHS4 AC015864.1-201ENST00000496512 544 ntBASIC4.91□□□□□ -1.62
CLHC1Q8NHS4 AC130404.1-201ENST00000539362 739 ntTSL 2 BASIC4.91□□□□□ -1.62
CLHC1Q8NHS4 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC4.91□□□□□ -1.62
CLHC1Q8NHS4 RNASE9-204ENST00000553541 1136 ntAPPRIS P3 TSL 1 (best) BASIC4.91□□□□□ -1.62
CLHC1Q8NHS4 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC4.91□□□□□ -1.62
CLHC1Q8NHS4 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC4.91□□□□□ -1.62
CLHC1Q8NHS4 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC4.91□□□□□ -1.62
CLHC1Q8NHS4 AC015845.2-201ENST00000581805 472 ntTSL 2 BASIC4.91□□□□□ -1.62
CLHC1Q8NHS4 MIR4310-201ENST00000582950 57 ntBASIC4.91□□□□□ -1.62
CLHC1Q8NHS4 AC136428.4-201ENST00000634254 1155 ntBASIC4.91□□□□□ -1.62
CLHC1Q8NHS4 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC4.91□□□□□ -1.62
CLHC1Q8NHS4 SCARNA15-201ENST00000607520 4325 ntBASIC4.91□□□□□ -1.62
CLHC1Q8NHS4 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC4.91□□□□□ -1.62
CLHC1Q8NHS4 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
CLHC1Q8NHS4 AL161911.1-202ENST00000464488 1534 ntAPPRIS P1 TSL 5 BASIC4.91□□□□□ -1.62
CLHC1Q8NHS4 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC4.91□□□□□ -1.62
CLHC1Q8NHS4 SCN1A-218ENST00000640036 8131 ntAPPRIS ALT1 TSL 5 BASIC4.91□□□□□ -1.62
CLHC1Q8NHS4 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC4.91□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 108.2 ms